Gene detail

Detail information of GWHGAAZE009483

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010273742.1	0	PREDICTED: 60S ribosomal protein L5-like [Nelumbo nucifera]
Swissprot	tr\|Q6UNT2\|RL5_CUCSA	0	60S ribosomal protein L5
trEMBL	tr\|A9PFA8\|A9PFA8_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP49343.1}
TAIR10	AT3G25520.1	9E-138	ribosomal protein L5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	110970465	110973542	+
GWHAAZE00000002	mRNA	110970465	110973542	+
GWHAAZE00000002	exon	110970465	110970467	+
GWHAAZE00000002	exon	110971258	110971327	+
GWHAAZE00000002	exon	110971477	110971568	+
GWHAAZE00000002	exon	110971841	110971967	+
GWHAAZE00000002	exon	110972051	110972130	+
GWHAAZE00000002	exon	110972223	110972339	+
GWHAAZE00000002	exon	110972439	110972573	+
GWHAAZE00000002	exon	110972695	110972864	+
GWHAAZE00000002	exon	110973425	110973542	+
GWHAAZE00000002	CDS	110970465	110970467	+
GWHAAZE00000002	CDS	110971258	110971327	+
GWHAAZE00000002	CDS	110971477	110971568	+
GWHAAZE00000002	CDS	110971841	110971967	+
GWHAAZE00000002	CDS	110972051	110972130	+
GWHAAZE00000002	CDS	110972223	110972339	+
GWHAAZE00000002	CDS	110972439	110972573	+
GWHAAZE00000002	CDS	110972695	110972864	+
GWHAAZE00000002	CDS	110973425	110973542	+

Transcript Sequence
>GWHTAAZE009495 ATGCCTTTCGTCAAGTCCCAGAAGTCAAGAGCTTACTTCAAGCGGTACCAAGTTAAATTCAAGAGAAGGAGAGAGGGCAAGACTGACTATCGGGCCAGGATTCGCCTGATTAATCAAGACAAAAATAAGTACAACACCCCAAAATACCGCTTTGTTGTGCGCTTTACCAACAAGGATATAGTTGCACAGATTTTATCTGCTAGCATTGCTGGTGATATGGTTCTTGCAGCCGCCTACGCTCATGAACTCCCTCATTATGGACTTGAAGTGGGCCTTACAAATTATGCTGCAGCTTATTGTACTGGACTTCTGTTGGCTCGCCGAGTTTTGAAAATGCTCGAGATGGACGATGAATATCAGGGAAATGTTGAGGCAACTGGTGAGGACTTTTCTGTTGAACCAGCAGAAAGCAGGAGGCCTTTCCGTGCTCTCCTTGATGTTGGCCTTATCCGAACAACTACCGGGAATCGTGTATTTGGTGCCCTTAAGGGAGCATTGGATGGTGGACTTGACGTTCCCCACAGTGACAAGAGGTTTGCTGGTTTTGACAAGGAGAGCAAGAATCTTGACGCTGAGGTGCACCGCAAGTATGTCTATGGTGGCCATGTTGCTGCATACATGAGGAGTTTGATTGAAGATGAGCCAGAGAAGTACCAGACTCACTTTTCTGAGTACATAAAGAAGGGTATTGAGGCAGATGAGATTGAGGAGTTGTACAAGAAGGTCCATGCTGCCATTCGTGCTGATCCCACACCAAAGAAATCTGAGAAGCAGCCACGAAAGGAGCACAAGAGGTTCAACCTTAAGAAGCTAACATACGAGGAGAGGAAGGCCAAGTTGATAGAGAGGTTAAATGCTCTCAACTCGGCCGCAGGTGCTGATGACGATGAAGACGAAGATGATGATGAGTAA

Network for GWHGAAZE009483

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17144.5	Ribosomal_L5e	14	175	1.50E-81
PF14204.7	Ribosomal_L18_c	191	280	1.70E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02932	RP-L5e, RPL5	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome
GO:0008097	molecular_function	5S rRNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	544.872
	SRR3591706	second leaf	152.638
	SRR3591707	mature leaf	54.788
	SRR3591708	Shoot apex	720.448
	SRR3591709	Stem	181.148
	SRR3591710	White floral bud	150.884
	SRR3591711	White flower	223.467
	SRR3591712	Green floral bud	426.379
	SRR3591713	Yellow flower	139.323
SRP173429	SRR8316895	Juvenile bud stage	300.341
	SRR8316896	Juvenile bud stage	445.167
	SRR8316897	Juvenile bud stage	230.790
	SRR8316894	Third green stage	194.402
	SRR8316900	Third green stage	625.848
	SRR8316901	Third green stage	522.576
	SRR8316898	Complete white stage	56.093
	SRR8316899	Complete white stage	449.867
	SRR8316903	Complete white stage	80.615
	SRR8316902	Silver flowering stage	53.037
	SRR8316904	Silver flowering stage	51.144
	SRR8316905	Silver flowering stage	19.917
	SRR8316906	Gold flowering stage	96.720
	SRR8316907	Gold flowering stage	101.945
	SRR8316908	Gold flowering stage	147.232
SRP132670	SRR6706286	Control	793.776
	SRR6706287	Light intensity 50%	814.351
	SRR6706288	Light intensity 20%	892.947
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	409.800
	CNS0095593	Slightly white alabastrum(diploid) 2	481.179
	CNS0095594	Slightly white alabastrum(diploid) 3	362.099
	CNS0095595	Whole white alabastrum(diploid) 2	400.476
	CNS0095596	Whole white alabastrum(diploid) 3	476.727
	CNS0095597	Whole white alabastrum(diploid) 4	355.387
	CNS0095598	Silvery flower (diploied) 1	254.857
	CNS0095599	Silvery flower (diploied) 2	220.985
	CNS0095600	Silvery flower (diploied) 3	110.632
	CNS0095601	Golden flower (diploid) 1	242.484
	CNS0095602	Golden flower (diploid) 2	147.762
	CNS0095603	Golden flower (diploid) 3	134.091
	CNS0095604	Slightly white alabastrum(tetraploid) 1	446.174
	CNS0095605	Slightly white alabastrum(tetraploid) 2	432.657
	CNS0095606	Slightly white alabastrum(tetraploid) 3	585.922
	CNS0095607	Whole white alabastrum(tetraploid) 1	258.919
	CNS0095608	Whole white alabastrum(tetraploid) 2	238.443
	CNS0095609	Whole white alabastrum(tetraploid) 3	476.167
	CNS0095610	Silvery flower (tetraploid) 1	91.563
	CNS0095611	Silvery flower (tetraploid) 2	88.200
	CNS0095612	Silvery flower (tetraploid) 3	52.644
	CNS0095613	Golden flower (tetraploid) 1	41.586
	CNS0095614	Golden flower (tetraploid) 2	73.251
	CNS0095615	Golden flower (tetraploid) 3	30.974
CRA001975	CRR073297	Stem 1	676.089
	CRR073298	Stem 2	645.842
	CRR073299	Stem 3	670.317
	CRR073300	Leaf 1	745.749
	CRR073301	Leaf 2	797.671
	CRR073302	Leaf 3	1027.791
	CRR073303	Juvenile bud 1	707.177
	CRR073304	Juvenile bud 2	414.618
	CRR073305	Juvenile bud 3	549.733
	CRR073306	Third green 1	21.847
	CRR073307	Third green 2	29.225
	CRR073308	Third green 3	32.687
	CRR073309	Second white 1	38.069
	CRR073310	Second white 2	32.979
	CRR073311	Second white 3	23.207
	CRR073312	Silver flowering 1	35.555
	CRR073313	Silver flowering 2	56.293
	CRR073314	Silver flowering 3	43.475
	CRR073315	Gold flowering 1	192.573
	CRR073316	Gold flowering 2	220.313
	CRR073317	Gold flowering 3	221.077
	CRR073318	Tawny withering 1	481.643
	CRR073319	Tawny withering 2	343.760
	CRR073320	Tawny withering 3	421.901