Gene detail

Detail information of GWHGAAZE009480

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003546796.1	1.82986E-74	PREDICTED: peroxisomal membrane protein 13 [Glycine max]
Swissprot	tr\|Q9SRR0\|PEX13_ARATH	3E-32	Peroxisomal membrane protein 13
trEMBL	tr\|I1MD37\|I1MD37_SOYBN	7E-75	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G03210.1}
TAIR10	AT3G07560.1	1E-22	peroxin 13

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	110940547	110944943	+
GWHAAZE00000002	mRNA	110940547	110944943	+
GWHAAZE00000002	exon	110940547	110940559	+
GWHAAZE00000002	exon	110942024	110942252	+
GWHAAZE00000002	exon	110942907	110943189	+
GWHAAZE00000002	exon	110944734	110944943	+
GWHAAZE00000002	CDS	110940547	110940559	+
GWHAAZE00000002	CDS	110942024	110942252	+
GWHAAZE00000002	CDS	110942907	110943189	+
GWHAAZE00000002	CDS	110944734	110944943	+

Transcript Sequence
>GWHTAAZE009492 ATGGAGGAGAGAGGTAGTAGCCCTCCTCCGAAACCCTGGGAACGAGCTGGGTCCTCATCTGGTGGTGCCCCATTTAAACCTCCCTCTCCTGGTAGCACAAGTGATGTAGTGGAGGCTTCTGGAACAGCCAGACCAGGCGAAATTGTTTCAACTAATGATGCGACCACATCTATTAACAGAAATTCTCTAGGGAGACCTGTACCTGCTAGGCCATGGGAGCAGCAGACATACGGAGCAAACACTTATGGGTCAGGAATGTATGGAGGGTCTTACGGCGGAGTTGGAGGGTCTTACGGCACCGGGGGTTTGTATGGAAACAGCATGTATAGAGGAGGAGGTTATGGCGGGCTCTATGGAGGTGGCGGTGGTGGCATGTATGGTGGGGGTATGTATGGTGGGGGTATGGGAGGCCCAATGGGTGGATATGGAATGGGCATGGGTGGTCCATACGGCGATCAAGATCCAAATAATCCATTCGGTGGTCCGCCATCTCCACCAGGCTTTTGGGTTTCTGTAATGCGGGTGTTGTTTGATCGCTCTGGGATGTTATATGGAGAGCTAGCTAGATTTGTCCTTAGACTGCTGGGAGTCAGAACAAACCGTAAGAGAGTTCAACCCGCGGGACCCAATGGACTACTCGGTCCTCACAATCCCCAAGGGAACCAAAACTACGTTGAAGGACCCAAGGCGGCCCCGCCAAGCGGTAACTGGGACAATGTATGGGGAAATAACTGA

Network for GWHGAAZE009480

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13344	PEX13	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	57.609
	SRR3591706	second leaf	31.593
	SRR3591707	mature leaf	40.210
	SRR3591708	Shoot apex	35.525
	SRR3591709	Stem	66.687
	SRR3591710	White floral bud	93.094
	SRR3591711	White flower	101.057
	SRR3591712	Green floral bud	55.920
	SRR3591713	Yellow flower	83.122
SRP173429	SRR8316895	Juvenile bud stage	37.407
	SRR8316896	Juvenile bud stage	49.499
	SRR8316897	Juvenile bud stage	29.161
	SRR8316894	Third green stage	13.561
	SRR8316900	Third green stage	49.526
	SRR8316901	Third green stage	55.771
	SRR8316898	Complete white stage	42.585
	SRR8316899	Complete white stage	85.890
	SRR8316903	Complete white stage	59.235
	SRR8316902	Silver flowering stage	52.521
	SRR8316904	Silver flowering stage	49.551
	SRR8316905	Silver flowering stage	27.739
	SRR8316906	Gold flowering stage	92.957
	SRR8316907	Gold flowering stage	91.060
	SRR8316908	Gold flowering stage	101.787
SRP132670	SRR6706286	Control	75.644
	SRR6706287	Light intensity 50%	78.683
	SRR6706288	Light intensity 20%	76.893
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	59.933
	CNS0095593	Slightly white alabastrum(diploid) 2	69.479
	CNS0095594	Slightly white alabastrum(diploid) 3	52.541
	CNS0095595	Whole white alabastrum(diploid) 2	56.743
	CNS0095596	Whole white alabastrum(diploid) 3	55.042
	CNS0095597	Whole white alabastrum(diploid) 4	52.720
	CNS0095598	Silvery flower (diploied) 1	62.806
	CNS0095599	Silvery flower (diploied) 2	67.987
	CNS0095600	Silvery flower (diploied) 3	86.350
	CNS0095601	Golden flower (diploid) 1	81.197
	CNS0095602	Golden flower (diploid) 2	80.589
	CNS0095603	Golden flower (diploid) 3	83.170
	CNS0095604	Slightly white alabastrum(tetraploid) 1	58.716
	CNS0095605	Slightly white alabastrum(tetraploid) 2	56.334
	CNS0095606	Slightly white alabastrum(tetraploid) 3	73.451
	CNS0095607	Whole white alabastrum(tetraploid) 1	73.504
	CNS0095608	Whole white alabastrum(tetraploid) 2	60.475
	CNS0095609	Whole white alabastrum(tetraploid) 3	74.917
	CNS0095610	Silvery flower (tetraploid) 1	143.743
	CNS0095611	Silvery flower (tetraploid) 2	93.180
	CNS0095612	Silvery flower (tetraploid) 3	137.176
	CNS0095613	Golden flower (tetraploid) 1	108.503
	CNS0095614	Golden flower (tetraploid) 2	116.567
	CNS0095615	Golden flower (tetraploid) 3	86.911
CRA001975	CRR073297	Stem 1	55.328
	CRR073298	Stem 2	52.833
	CRR073299	Stem 3	64.834
	CRR073300	Leaf 1	63.332
	CRR073301	Leaf 2	69.518
	CRR073302	Leaf 3	71.336
	CRR073303	Juvenile bud 1	73.698
	CRR073304	Juvenile bud 2	88.112
	CRR073305	Juvenile bud 3	80.693
	CRR073306	Third green 1	124.314
	CRR073307	Third green 2	104.113
	CRR073308	Third green 3	99.427
	CRR073309	Second white 1	130.565
	CRR073310	Second white 2	91.523
	CRR073311	Second white 3	87.634
	CRR073312	Silver flowering 1	98.625
	CRR073313	Silver flowering 2	112.140
	CRR073314	Silver flowering 3	87.953
	CRR073315	Gold flowering 1	56.648
	CRR073316	Gold flowering 2	63.288
	CRR073317	Gold flowering 3	72.059
	CRR073318	Tawny withering 1	72.242
	CRR073319	Tawny withering 2	77.214
	CRR073320	Tawny withering 3	75.510