Gene detail

Detail information of GWHGAAZE009475

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009610155.1	0	PREDICTED: A/G-specific adenine DNA glycosylase [Nicotiana tomentosiformis]
Swissprot	tr\|F4JRF4\|MUTYH_ARATH	1E-165	A/G-specific adenine DNA glycosylase
trEMBL	tr\|M1BT45\|M1BT45_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400052281}
TAIR10	AT4G12740.1	1E-136	HhH-GPD base excision DNA repair family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	110887031	110891107	+
GWHAAZE00000002	mRNA	110887031	110891107	+
GWHAAZE00000002	exon	110887031	110887654	+
GWHAAZE00000002	exon	110888127	110888186	+
GWHAAZE00000002	exon	110889402	110889521	+
GWHAAZE00000002	exon	110889604	110889701	+
GWHAAZE00000002	exon	110889855	110890396	+
GWHAAZE00000002	exon	110890485	110890585	+
GWHAAZE00000002	exon	110890939	110891107	+
GWHAAZE00000002	CDS	110887031	110887654	+
GWHAAZE00000002	CDS	110888127	110888186	+
GWHAAZE00000002	CDS	110889402	110889521	+
GWHAAZE00000002	CDS	110889604	110889701	+
GWHAAZE00000002	CDS	110889855	110890396	+
GWHAAZE00000002	CDS	110890485	110890585	+
GWHAAZE00000002	CDS	110890939	110891058	+
GWHAAZE00000002	three_prime_UTR	110891059	110891107	+

Transcript Sequence
>GWHTAAZE009487 ATGCCATTGAGGAAGTACTCGCGTATTCAAACAAATTTCTTAGCGGGAAAAAGTAGTAGAAACTCTTCTGTATTCTGTCTAAATTCTTCTCCTTCTCCGTCTTCCATTTCTTTATCGGTTTCTCACGGGCCGGTTAACCTAGCCGTCGACGTTACCAACACGAAAAACATAAAGAAGAAGATGACCAACCGCACCATTAAATTAAACAACAACAACAACAACAACAACAAGACTACTAACACTTCCATTACCAACAACAGGCCGAAGCCGAATAAGAGGCCACGACAGGTTAGAAAACCAAACCCTAAAAATCATCAGGAAGAAGAAAGATCTCCTTCAATTGGAGACATAGAGGATTTCTTCAAATTCGGAAAAGACGAAACCCTAGAAATTAGGGCTTCCCTGTTGGATTGGTACGACCACAACCAGAGGGACCTTCCCTGGCGCAGAATCAACAACAACAGTGGTGTTGATAGTGAAGAAGAAACTACTAGGAGAGCTTATGCTGTTTGGGTTTCTGAAGTAATGCTTCAGCAAACTAGGGTTCAGACTGTCATCGATTATTTCAACCGTTGGATGCTCAAATGGCCTACTCTTCATCACCTTGCTCAAGCTTCCCTTGAGGAGGTAAATGAGATGTGGGCAGGCTTGGGATATTATAGACGGGGGCGGTTTCTGCTTGAGGGAGCAAAAATGATTGTTGAAGGAGGCGGTGTGTTTCCTAAAAACAATTGTGATCTTCGTAAGGTTCGAGGAATTGGGGAGTATACGGCTGGCGCAATAGCCTCCATAGCATTCAAAGAGGCTGTGCCAGTGGTTGATGGAAATGTTGTTAGGGTAATTGCTAGGCTAAAGGCTATATCTGCAAATCCAAAAGACTCTGCGACAGTTAAGAACATTTGGAAACTAGCAGGGCAATTAGTTGATCCTTCTAGACCTGGAGATTTCAACCAGGCTCTTATGGAACTTGGTGCTACAATATGCAGTCCATTGAGCCCAAGCTGTTCTATCTGCCCTATCTCAGGTCAATGCTGTGTGCTATCTCTTTCTAAATCCAATGAATCAATAAATGTAACGGATTATCCAACAAAGGTGGTCAAGGCCAAACAAAGGCAAGATTTTTCAGCCGTGAGTGTTGTGGAGATATTGGATAGCGGAAATATGACGGAGAAAACCCAATCAGAGAGTAAATTTCTTCTTGTAAAAAGGCCAGATGAAGGTTTACTTGCCGGCCTCTGGGAGTTTCCATCTGTTACGTTAAAGGGAGAGACAGACTTGGCCACAAGGAGAGAAGCCGTTGATCATTTTCTAAAGAAGTCATTTAATCTAGACGTTAAAAAGTCATGTAATATAGTTTTACGGGAGGATGTTGGAGAATATGTCCACGTTTTCAGTCACATACGTCTAAAGATGTACATAGAGCTGTTTGTTTTGCATCTAAAAGGTAGGAAGAATATTATGCAGCAAGACAAAGAAAGCATTGTTTGGAAATATCTTGATAGTAAGGCCCTTGCGACCATTGGATTAACATCTGGAGTTAGGAGGGTTTACACTATGGTTCAGCAATTTAAGCAGATTAAGTTAAATCCGGTCCCAACGACAACAAGAAAGAAACCAATATCCAGAAAGAAAAGAGTCGCCGAGGTGGATCCGGGTGGGGAGTAGTGAAATGCTTAATAGGGATATAATTATCTTTGCAGTTATCCCTAATTGA

Network for GWHGAAZE009475

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00730.26	HhH-GPD	172	303	9.20E-19
PF14815.7	NUDIX_4	395	517	1.70E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03575	mutY	Base excision repair	map03410

Gene Ontology

GO term	Ontology	Name
GO:0006284	biological_process	base-excision repair
GO:0006281	biological_process	DNA repair
GO:0016787	molecular_function	hydrolase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.424
	SRR3591706	second leaf	1.202
	SRR3591707	mature leaf	0.805
	SRR3591708	Shoot apex	13.932
	SRR3591709	Stem	2.639
	SRR3591710	White floral bud	2.426
	SRR3591711	White flower	1.443
	SRR3591712	Green floral bud	1.395
	SRR3591713	Yellow flower	0.945
SRP173429	SRR8316895	Juvenile bud stage	2.289
	SRR8316896	Juvenile bud stage	2.021
	SRR8316897	Juvenile bud stage	1.098
	SRR8316894	Third green stage	1.137
	SRR8316900	Third green stage	1.532
	SRR8316901	Third green stage	1.475
	SRR8316898	Complete white stage	0.219
	SRR8316899	Complete white stage	2.116
	SRR8316903	Complete white stage	0.708
	SRR8316902	Silver flowering stage	0.452
	SRR8316904	Silver flowering stage	0.614
	SRR8316905	Silver flowering stage	0.173
	SRR8316906	Gold flowering stage	0.501
	SRR8316907	Gold flowering stage	0.743
	SRR8316908	Gold flowering stage	0.765
SRP132670	SRR6706286	Control	1.524
	SRR6706287	Light intensity 50%	2.153
	SRR6706288	Light intensity 20%	2.358
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.470
	CNS0095593	Slightly white alabastrum(diploid) 2	2.684
	CNS0095594	Slightly white alabastrum(diploid) 3	1.816
	CNS0095595	Whole white alabastrum(diploid) 2	1.563
	CNS0095596	Whole white alabastrum(diploid) 3	1.346
	CNS0095597	Whole white alabastrum(diploid) 4	0.718
	CNS0095598	Silvery flower (diploied) 1	2.442
	CNS0095599	Silvery flower (diploied) 2	1.146
	CNS0095600	Silvery flower (diploied) 3	1.152
	CNS0095601	Golden flower (diploid) 1	1.312
	CNS0095602	Golden flower (diploid) 2	1.149
	CNS0095603	Golden flower (diploid) 3	0.768
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.438
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.900
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.152
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.094
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.585
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.448
	CNS0095610	Silvery flower (tetraploid) 1	0.969
	CNS0095611	Silvery flower (tetraploid) 2	1.510
	CNS0095612	Silvery flower (tetraploid) 3	1.017
	CNS0095613	Golden flower (tetraploid) 1	0.923
	CNS0095614	Golden flower (tetraploid) 2	0.821
	CNS0095615	Golden flower (tetraploid) 3	0.721
CRA001975	CRR073297	Stem 1	2.562
	CRR073298	Stem 2	2.888
	CRR073299	Stem 3	1.760
	CRR073300	Leaf 1	1.521
	CRR073301	Leaf 2	1.444
	CRR073302	Leaf 3	1.021
	CRR073303	Juvenile bud 1	2.121
	CRR073304	Juvenile bud 2	0.376
	CRR073305	Juvenile bud 3	1.204
	CRR073306	Third green 1	0.171
	CRR073307	Third green 2	0.118
	CRR073308	Third green 3	0.056
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.083
	CRR073311	Second white 3	0.062
	CRR073312	Silver flowering 1	0.094
	CRR073313	Silver flowering 2	0.213
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.440
	CRR073316	Gold flowering 2	0.916
	CRR073317	Gold flowering 3	0.179
	CRR073318	Tawny withering 1	2.373
	CRR073319	Tawny withering 2	1.629
	CRR073320	Tawny withering 3	1.550