Gene detail

Detail information of GWHGAAZE009469

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO56335.1	0	hypothetical protein CISIN_1g019907mg [Citrus sinensis]
trEMBL	tr\|A0A067ER35\|A0A067ER35_CITSI	0	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU361215}
TAIR10	AT1G65650.1	8E-140	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	110800633	110806497	+
GWHAAZE00000002	mRNA	110800633	110806497	+
GWHAAZE00000002	exon	110800633	110800653	+
GWHAAZE00000002	exon	110801086	110801134	+
GWHAAZE00000002	exon	110804692	110804738	+
GWHAAZE00000002	exon	110805404	110805450	+
GWHAAZE00000002	exon	110805529	110805631	+
GWHAAZE00000002	exon	110805724	110806497	+
GWHAAZE00000002	CDS	110800633	110800653	+
GWHAAZE00000002	CDS	110801086	110801134	+
GWHAAZE00000002	CDS	110804692	110804738	+
GWHAAZE00000002	CDS	110805404	110805450	+
GWHAAZE00000002	CDS	110805529	110805631	+
GWHAAZE00000002	CDS	110805724	110806497	+

Transcript Sequence
>GWHTAAZE009479 ATGTTGATCTCGCCGGTGATGGATTTAGGTATTGCCATTATGTCTTGGTGCACAATCGAGTCTGATCCCGGCGTTTTTACGGAACTTATACAGCAAATGCAAGTAAAAGGGGTGCAGGTTGAGGAATTGTATTCATTAGACCTTGATTCGCTGAACAGTCTTAGGCCAGTGTATGGGTTAATATTCCTTTTCAAATGGCGTGCGGGCGAGAAGGATGACCGTCTTGTGATTAAAGATCCAAGCCCTAACCTATTTTTTGCTAGCCAGGTTATTAACAATGCTTGTGCAACCCAAGCGATCCTTTCTATCCTTATGAACTGCCCTGACGTCGATATCGGTCCAGAACTATCTGCATTGAAAGAATTCACCAAGAACTTCCCGCCTGAGCTTAAAGGCCTTGCCATAAATAACAGCGATGCCATTCGAACGGCCCACAACAGTTTTGCGAGACCTGAGCCGTTTGTTCCTGACGAGCAAAAATCTGCCGGTAAAGACGACGACGTGTATCATTTCATAAGCTACATACCCGTTGACGGTGTTCTCTATGAGCTCGATGGTTTGAAGGAGGGTCCCATTAGCCTCGGGCCATGCACCGGGGGCCAAGGTGATATCGACTGGCTAAAGGCGGTACAGCCAGTGATTCAAGAACGCATCGAGCGGTACTCGCAAACTGAGATTAGGTTTAATCTAATGGCTATTATTAAGAACAGGAGGGAGATATATAGTGCTGAAGTTAAAGAACTGCAGAGAAGGAGGGAGCGGATTCTGCAGCAGCTGGCGGCGTTGCAGTCAGAGAGGGTGGTGGATGGTGGCAATGTTGATGCGCTGAATAAGTCACTGTTGGAGGTGAATATGGGGATTCAAAGCGCGACCAATAAGATTTTAGTGGAGGAGGAAAAGTTCAAGAAGTGGAAAACGGAGAATATTCGTCGAAAGCACAATTACATTCCGTTTTTGTTCAACTTCCTTAAGATTCTTGCTGAGAAGAAGCAGTTGAGACCGCTTATCGAGAAAGCTAAACAAAAGACGAGTAAACCCTAG

Network for GWHGAAZE009469

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01088.22	Peptidase_C12	16	219	2.20E-71
PF18031.2	UCH_C	287	332	1.70E-20

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	UCH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0016579	biological_process	protein deubiquitination
GO:0004843	molecular_function	thiol-dependent ubiquitin-specific protease activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.657
	SRR3591706	second leaf	33.674
	SRR3591707	mature leaf	33.467
	SRR3591708	Shoot apex	50.276
	SRR3591709	Stem	41.208
	SRR3591710	White floral bud	49.532
	SRR3591711	White flower	54.770
	SRR3591712	Green floral bud	63.916
	SRR3591713	Yellow flower	48.159
SRP173429	SRR8316895	Juvenile bud stage	32.242
	SRR8316896	Juvenile bud stage	48.108
	SRR8316897	Juvenile bud stage	24.724
	SRR8316894	Third green stage	18.631
	SRR8316900	Third green stage	55.173
	SRR8316901	Third green stage	60.393
	SRR8316898	Complete white stage	18.345
	SRR8316899	Complete white stage	60.935
	SRR8316903	Complete white stage	30.644
	SRR8316902	Silver flowering stage	16.078
	SRR8316904	Silver flowering stage	21.326
	SRR8316905	Silver flowering stage	12.490
	SRR8316906	Gold flowering stage	38.911
	SRR8316907	Gold flowering stage	46.405
	SRR8316908	Gold flowering stage	48.054
SRP132670	SRR6706286	Control	73.418
	SRR6706287	Light intensity 50%	73.326
	SRR6706288	Light intensity 20%	70.817
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.266
	CNS0095593	Slightly white alabastrum(diploid) 2	46.083
	CNS0095594	Slightly white alabastrum(diploid) 3	49.865
	CNS0095595	Whole white alabastrum(diploid) 2	44.301
	CNS0095596	Whole white alabastrum(diploid) 3	43.765
	CNS0095597	Whole white alabastrum(diploid) 4	46.425
	CNS0095598	Silvery flower (diploied) 1	35.571
	CNS0095599	Silvery flower (diploied) 2	35.189
	CNS0095600	Silvery flower (diploied) 3	36.676
	CNS0095601	Golden flower (diploid) 1	33.257
	CNS0095602	Golden flower (diploid) 2	43.488
	CNS0095603	Golden flower (diploid) 3	39.320
	CNS0095604	Slightly white alabastrum(tetraploid) 1	54.849
	CNS0095605	Slightly white alabastrum(tetraploid) 2	49.315
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.517
	CNS0095607	Whole white alabastrum(tetraploid) 1	43.546
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.103
	CNS0095609	Whole white alabastrum(tetraploid) 3	53.530
	CNS0095610	Silvery flower (tetraploid) 1	38.308
	CNS0095611	Silvery flower (tetraploid) 2	39.410
	CNS0095612	Silvery flower (tetraploid) 3	36.183
	CNS0095613	Golden flower (tetraploid) 1	36.530
	CNS0095614	Golden flower (tetraploid) 2	45.953
	CNS0095615	Golden flower (tetraploid) 3	46.074
CRA001975	CRR073297	Stem 1	50.928
	CRR073298	Stem 2	49.887
	CRR073299	Stem 3	51.869
	CRR073300	Leaf 1	53.393
	CRR073301	Leaf 2	57.815
	CRR073302	Leaf 3	52.037
	CRR073303	Juvenile bud 1	48.829
	CRR073304	Juvenile bud 2	40.981
	CRR073305	Juvenile bud 3	49.472
	CRR073306	Third green 1	23.091
	CRR073307	Third green 2	20.771
	CRR073308	Third green 3	25.051
	CRR073309	Second white 1	27.001
	CRR073310	Second white 2	23.944
	CRR073311	Second white 3	23.159
	CRR073312	Silver flowering 1	22.442
	CRR073313	Silver flowering 2	25.019
	CRR073314	Silver flowering 3	22.116
	CRR073315	Gold flowering 1	29.675
	CRR073316	Gold flowering 2	28.217
	CRR073317	Gold flowering 3	28.941
	CRR073318	Tawny withering 1	46.068
	CRR073319	Tawny withering 2	41.415
	CRR073320	Tawny withering 3	43.434