Detail information of GWHGAAZE009468


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007017121.13.2996E-60Coiled-coil domain-containing protein 109A isoform 2 [Theobroma cacao]
Swissprottr|Q8VYR0|MCU5_ARATH2E-41Calcium uniporter protein 5, mitochondrial (Precursor)
trEMBLtr|A0A061GY30|A0A061GY30_THECC1E-60Coiled-coil domain-containing protein 109A isoform 2 {ECO:0000313|EMBL:EOY34740.1}
TAIR10AT1G57610.22E-25Protein of unknown function (DUF607)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene110786536110789144-
GWHAAZE00000002mRNA110786536110789144-
GWHAAZE00000002exon110788752110789144-
GWHAAZE00000002exon110786536110787111-
GWHAAZE00000002CDS110788752110789144-
GWHAAZE00000002CDS110786848110787111-
GWHAAZE00000002three_prime_UTR110786536110786847-
Transcript Sequence

Network for GWHGAAZE009468

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20858MCU Calcium signaling pathway map04020
Cellular senescencemap04218
NOD-like receptor signaling pathwaymap04621

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.608
SRR3591706second leaf5.971
SRR3591707mature leaf0.681
SRR3591708Shoot apex38.196
SRR3591709Stem16.062
SRR3591710White floral bud24.155
SRR3591711White flower13.740
SRR3591712Green floral bud55.906
SRR3591713Yellow flower3.944
SRP173429 SRR8316895Juvenile bud stage 93.054
SRR8316896Juvenile bud stage 107.448
SRR8316897Juvenile bud stage 72.302
SRR8316894Third green stage 25.795
SRR8316900Third green stage 85.988
SRR8316901Third green stage 114.172
SRR8316898Complete white stage 0.290
SRR8316899Complete white stage 59.255
SRR8316903Complete white stage 1.223
SRR8316902Silver flowering stage1.090
SRR8316904Silver flowering stage0.803
SRR8316905Silver flowering stage0.105
SRR8316906Gold flowering stage 0.208
SRR8316907Gold flowering stage 0.392
SRR8316908Gold flowering stage 0.052
SRP132670SRR6706286Control22.085
SRR6706287Light intensity 50%25.572
SRR6706288Light intensity 20%22.773
CNP0000432CNS0095592Slightly white alabastrum(diploid) 199.850
CNS0095593Slightly white alabastrum(diploid) 2115.158
CNS0095594Slightly white alabastrum(diploid) 3122.941
CNS0095595Whole white alabastrum(diploid) 2119.935
CNS0095596Whole white alabastrum(diploid) 390.109
CNS0095597Whole white alabastrum(diploid) 493.293
CNS0095598Silvery flower (diploied) 1111.466
CNS0095599Silvery flower (diploied) 2119.536
CNS0095600Silvery flower (diploied) 330.658
CNS0095601Golden flower (diploid) 1110.040
CNS0095602Golden flower (diploid) 259.137
CNS0095603Golden flower (diploid) 356.271
CNS0095604Slightly white alabastrum(tetraploid) 159.899
CNS0095605Slightly white alabastrum(tetraploid) 264.721
CNS0095606Slightly white alabastrum(tetraploid) 37.295
CNS0095607Whole white alabastrum(tetraploid) 182.211
CNS0095608Whole white alabastrum(tetraploid) 279.541
CNS0095609Whole white alabastrum(tetraploid) 354.257
CNS0095610Silvery flower (tetraploid) 11.070
CNS0095611Silvery flower (tetraploid) 21.943
CNS0095612Silvery flower (tetraploid) 33.217
CNS0095613Golden flower (tetraploid) 10.416
CNS0095614Golden flower (tetraploid) 20.537
CNS0095615Golden flower (tetraploid) 31.713
CRA001975CRR073297Stem 146.316
CRR073298Stem 268.218
CRR073299Stem 357.785
CRR073300Leaf 198.829
CRR073301Leaf 2148.181
CRR073302Leaf 360.426
CRR073303Juvenile bud 146.347
CRR073304Juvenile bud 248.051
CRR073305Juvenile bud 370.738
CRR073306Third green 14.949
CRR073307Third green 211.163
CRR073308Third green 37.411
CRR073309Second white 11.149
CRR073310Second white 21.892
CRR073311Second white 31.868
CRR073312Silver flowering 15.510
CRR073313Silver flowering 25.547
CRR073314Silver flowering 34.148
CRR073315Gold flowering 125.914
CRR073316Gold flowering 218.366
CRR073317Gold flowering 320.352
CRR073318Tawny withering 19.584
CRR073319Tawny withering 220.968
CRR073320Tawny withering 317.381