Detail information of GWHGAAZE009448


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006344089.14.2096E-116PREDICTED: putative B3 domain-containing protein At5g58280-like [Solanum tuberosum]
Swissprottr|Q9FHB2|Y5828_ARATH2E-69Putative B3 domain-containing protein At5g58280
trEMBLtr|M1BUK6|M1BUK6_SOLTU2E-116Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400053199}
TAIR10AT5G58280.14E-57AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene110464096110467929-
GWHAAZE00000002mRNA110464096110467929-
GWHAAZE00000002exon110467838110467929-
GWHAAZE00000002exon110466666110466766-
GWHAAZE00000002exon110466451110466516-
GWHAAZE00000002exon110466255110466350-
GWHAAZE00000002exon110464672110464727-
GWHAAZE00000002exon110464428110464587-
GWHAAZE00000002exon110464096110464317-
GWHAAZE00000002five_prime_UTR110467838110467929-
GWHAAZE00000002five_prime_UTR110466744110466766-
GWHAAZE00000002CDS110466666110466743-
GWHAAZE00000002CDS110466451110466516-
GWHAAZE00000002CDS110466255110466350-
GWHAAZE00000002CDS110464672110464727-
GWHAAZE00000002CDS110464428110464587-
GWHAAZE00000002CDS110464096110464317-
Transcript Sequence

Network for GWHGAAZE009448

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B31372211.20E-15
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.289
SRR3591706second leaf1.176
SRR3591707mature leaf0.080
SRR3591708Shoot apex21.845
SRR3591709Stem4.236
SRR3591710White floral bud0.376
SRR3591711White flower0.570
SRR3591712Green floral bud0.675
SRR3591713Yellow flower0.433
SRP173429 SRR8316895Juvenile bud stage 2.173
SRR8316896Juvenile bud stage 2.823
SRR8316897Juvenile bud stage 1.060
SRR8316894Third green stage 1.593
SRR8316900Third green stage 0.871
SRR8316901Third green stage 2.055
SRR8316898Complete white stage 0.160
SRR8316899Complete white stage 1.354
SRR8316903Complete white stage 0.740
SRR8316902Silver flowering stage0.057
SRR8316904Silver flowering stage0.091
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.111
SRR8316907Gold flowering stage 0.096
SRR8316908Gold flowering stage 0.153
SRP132670SRR6706286Control1.361
SRR6706287Light intensity 50%1.736
SRR6706288Light intensity 20%1.927
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.082
CNS0095593Slightly white alabastrum(diploid) 21.022
CNS0095594Slightly white alabastrum(diploid) 31.142
CNS0095595Whole white alabastrum(diploid) 20.835
CNS0095596Whole white alabastrum(diploid) 30.244
CNS0095597Whole white alabastrum(diploid) 40.853
CNS0095598Silvery flower (diploied) 10.829
CNS0095599Silvery flower (diploied) 21.148
CNS0095600Silvery flower (diploied) 30.447
CNS0095601Golden flower (diploid) 10.757
CNS0095602Golden flower (diploid) 20.415
CNS0095603Golden flower (diploid) 30.800
CNS0095604Slightly white alabastrum(tetraploid) 12.485
CNS0095605Slightly white alabastrum(tetraploid) 21.574
CNS0095606Slightly white alabastrum(tetraploid) 33.370
CNS0095607Whole white alabastrum(tetraploid) 11.040
CNS0095608Whole white alabastrum(tetraploid) 20.238
CNS0095609Whole white alabastrum(tetraploid) 30.664
CNS0095610Silvery flower (tetraploid) 10.227
CNS0095611Silvery flower (tetraploid) 20.219
CNS0095612Silvery flower (tetraploid) 30.279
CNS0095613Golden flower (tetraploid) 10.252
CNS0095614Golden flower (tetraploid) 20.371
CNS0095615Golden flower (tetraploid) 30.188
CRA001975CRR073297Stem 13.137
CRR073298Stem 23.071
CRR073299Stem 32.245
CRR073300Leaf 11.675
CRR073301Leaf 21.064
CRR073302Leaf 30.507
CRR073303Juvenile bud 10.399
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.479
CRR073306Third green 10.000
CRR073307Third green 20.572
CRR073308Third green 30.099
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 14.331
CRR073319Tawny withering 21.945
CRR073320Tawny withering 35.901