Gene detail

Detail information of GWHGAAZE009445

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI15804.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9LVM0\|Y5830_ARATH	Probable inactive receptor kinase At5g58300 (Precursor)
trEMBL	tr\|F6GU76\|F6GU76_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43392.1}
TAIR10	AT5G58300.2	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	110420448	110424129	-
GWHAAZE00000002	mRNA	110420448	110424129	-
GWHAAZE00000002	exon	110424120	110424129	-
GWHAAZE00000002	exon	110422155	110423471	-
GWHAAZE00000002	exon	110420448	110421076	-
GWHAAZE00000002	CDS	110424120	110424129	-
GWHAAZE00000002	CDS	110422155	110423471	-
GWHAAZE00000002	CDS	110420448	110421076	-

Transcript Sequence
>GWHTAAZE009455 ATGTCTCAGGGAAAATTGCAAGAGCTGCTCCATTTTCACCTTCACGGAACCAAACAATTCCTTGTCAAATTCTTCTCTCGCTTTCAACTGCTTCCATTTATCTTCGTCATACTTACCCTTCTGCCTTTGGCACTCGGTGACTTGAACTCTGACACACAAGCACTTCTAGCATTTGCTGCTGCTGTGCCCCATAAGCCAAAACTCAATTGGAATCCTGCTACGCCCACCTGCACATCTTGGGTAGGCATCAATTGCACAAGGGGTGGGACTCGTGTGCTTTCTCTACGACTTCCAGGTGTTGGACTTGTGGGACCTATCCCAGCCAATACTCTTGGAAAGTTAGATGCCCTGAGGGTTCTCAGTCTTCGATCAAATCTCCTCAATGGAAAACTTCCTTCTGACATTGCTTCCCTTCCGTCCCTTCACTACCTCTATCTCCAACACAACAACCTAACTGGTGATATTCCAACATCCTTATCCTCCCAACTCAATGTATTGGATCTTTCATTTAACTCCTTCACAGGCAATATTCCATCAACAATTCAGAATTTGACTCGACTCACTGGACTGAGCCTCCAAAACAACTCCCTTTATGGAGCCATTCCTAATATAACTTTCCCAAGTCTGAGACGTTTGAATTTAAGCTACAACCATCTCAATGGCTCTATTCCACCTTCTCTCCAACAGTTCCCTAATTCTTCTTTTGTTGGAAACTCTCGCTTGTGTGGACTGCCTCTAAATCCTTGTTCCTCCCCTTCTCCTTCCCCTGCTAATATTCCACCCCCACCAAAAGAAACATCGAAAAAGAAATTCGCCTTATGGGCTATAATTGCCATTGCAGTAGGAGGGGGTGTAATGCTTTTTGTCATAGCTCTTATCATATGCTTGTGCTTGTTGAAGAAAAAGGAGAGCAAGGGAACTGGTGTGGTAAAAGGGAAGTCCTCGAGTGGTGGAAGGGGTGAGAAGCCGAGGGAGGAGTTTGGTAGTGGGGTCCAAGAGCCTGAAAAAAACAAACTTGTTTTCTTTGAAGGCTGTTCTTTTAATTTCGATCTCGAGGATTTATTAAGGGCTTCGGCAGAAGTGCTTGGGAAAGGGAGTTACGGGACTGCATATAAGGCTGTTCTGGAGGAGTCAACGACTGTGGTGGTAAAAAGGTTGAAAGAAGTAGTGGTGGGGAAAAAAGACTTTGAACAGCAGATGGACATTATAGGGAGAGTTGGGCAGCACCCAAATGTGATGCCTCTTCGCGCTTATTATTATTCTAAGGATGAGAAACTTCTGGTCTATGATTATATCCAAGGGGGTAGCTTGTCCGCACTTTTGCATGGTAACAGGGGCAGTGGAAGAACACCATTAGATTGGGAGACCAGAGTTAAGATCTCCCTCGGAGCCGCCAGAGGCATAGCCCACATCCACTCGGTGGGCGGCACTAAATTCACACATGGCAACATCAAGGCCTCAAACATCCTCCTCTCCAATGACCTAGACGCTTCGGTGTCTGATCTAGGCCTAGCCCCACTCATGAACTTCCCTGCCACCCGGTCCCGCCATGCAGGCTATCGTGCACCGGAGGTGATCGAAACCCGAAAACACACCCACAAATCTGACGTTTACAGCTTCGGCGTACTCATGCTTGAAATGCTGACGGGCAAACAACCGATCCACTCACCGGCTCGGGATGATATGGTTGACCTCCCCAGGTGGGTCCAGTCGGTGGTGAGGGAAGAATGGACCGCCGAGGTTTTCGATGTCGAGTTGATGAGGTTTCAAAATATTGAAGAGGAGATGGTGCAAATGCTGCAGATTGCTATGGCTTGTGTAGTGAGGGTACCCGATATGCGGCCAAGTATGGATGAAGTTGTTAGGATGATTGAAGAGGTTCGGGTATCTGACTCGGAGAATCGCCCCTCTTCCGATGAGAACAAGTCCAAGGATTCAAATGTGCAGACCCCATGA

Network for GWHGAAZE009445

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	49	85	5.60E-06
PF13855.7	LRR_8	106	151	3.50E-07
PF00560.34	LRR_1	163	184	1.4
PF00560.34	LRR_1	208	229	0.09
PF00069.26	Pkinase	359	622	1.70E-36

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.246
	SRR3591706	second leaf	20.573
	SRR3591707	mature leaf	2.587
	SRR3591708	Shoot apex	29.929
	SRR3591709	Stem	11.755
	SRR3591710	White floral bud	9.186
	SRR3591711	White flower	4.209
	SRR3591712	Green floral bud	26.653
	SRR3591713	Yellow flower	1.058
SRP173429	SRR8316895	Juvenile bud stage	15.093
	SRR8316896	Juvenile bud stage	24.313
	SRR8316897	Juvenile bud stage	8.309
	SRR8316894	Third green stage	8.879
	SRR8316900	Third green stage	19.457
	SRR8316901	Third green stage	23.404
	SRR8316898	Complete white stage	0.625
	SRR8316899	Complete white stage	15.286
	SRR8316903	Complete white stage	1.896
	SRR8316902	Silver flowering stage	0.329
	SRR8316904	Silver flowering stage	0.479
	SRR8316905	Silver flowering stage	0.274
	SRR8316906	Gold flowering stage	1.024
	SRR8316907	Gold flowering stage	0.524
	SRR8316908	Gold flowering stage	0.994
SRP132670	SRR6706286	Control	16.799
	SRR6706287	Light intensity 50%	18.329
	SRR6706288	Light intensity 20%	21.026
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.243
	CNS0095593	Slightly white alabastrum(diploid) 2	20.500
	CNS0095594	Slightly white alabastrum(diploid) 3	19.081
	CNS0095595	Whole white alabastrum(diploid) 2	14.668
	CNS0095596	Whole white alabastrum(diploid) 3	15.838
	CNS0095597	Whole white alabastrum(diploid) 4	12.651
	CNS0095598	Silvery flower (diploied) 1	8.689
	CNS0095599	Silvery flower (diploied) 2	6.277
	CNS0095600	Silvery flower (diploied) 3	3.648
	CNS0095601	Golden flower (diploid) 1	6.185
	CNS0095602	Golden flower (diploid) 2	4.259
	CNS0095603	Golden flower (diploid) 3	3.556
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.979
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.276
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.644
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.648
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.358
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.366
	CNS0095610	Silvery flower (tetraploid) 1	1.556
	CNS0095611	Silvery flower (tetraploid) 2	2.994
	CNS0095612	Silvery flower (tetraploid) 3	1.791
	CNS0095613	Golden flower (tetraploid) 1	0.157
	CNS0095614	Golden flower (tetraploid) 2	0.946
	CNS0095615	Golden flower (tetraploid) 3	0.155
CRA001975	CRR073297	Stem 1	32.338
	CRR073298	Stem 2	33.245
	CRR073299	Stem 3	36.154
	CRR073300	Leaf 1	25.668
	CRR073301	Leaf 2	26.925
	CRR073302	Leaf 3	19.714
	CRR073303	Juvenile bud 1	11.718
	CRR073304	Juvenile bud 2	7.196
	CRR073305	Juvenile bud 3	15.440
	CRR073306	Third green 1	0.608
	CRR073307	Third green 2	0.411
	CRR073308	Third green 3	0.674
	CRR073309	Second white 1	0.118
	CRR073310	Second white 2	0.150
	CRR073311	Second white 3	0.118
	CRR073312	Silver flowering 1	0.053
	CRR073313	Silver flowering 2	0.157
	CRR073314	Silver flowering 3	0.486
	CRR073315	Gold flowering 1	4.537
	CRR073316	Gold flowering 2	5.491
	CRR073317	Gold flowering 3	6.453
	CRR073318	Tawny withering 1	16.327
	CRR073319	Tawny withering 2	10.282
	CRR073320	Tawny withering 3	21.710