Detail information of GWHGAAZE009443


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009589074.14.581E-105PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Nicotiana tomentosiformis]
Swissprottr|P35135|UBC4_SOLLC6E-107Ubiquitin-conjugating enzyme E2-17 kDa
trEMBLtr|B7U4A4|B7U4A4_SOLLC5E-105Ubiquitin conjugating enzyme {ECO:0000313|EMBL:ACJ48964.1}
TAIR10AT1G64230.21E-83ubiquitin-conjugating enzyme 28

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene110379460110383976-
GWHAAZE00000002mRNA110379460110383976-
GWHAAZE00000002exon110379460110379603-
GWHAAZE00000002exon110380504110380608-
GWHAAZE00000002exon110382476110382603-
GWHAAZE00000002exon110383907110383976-
GWHAAZE00000002CDS110383907110383976-
GWHAAZE00000002CDS110382476110382603-
GWHAAZE00000002CDS110380504110380608-
GWHAAZE00000002CDS110379460110379603-
Transcript Sequence

Network for GWHGAAZE009443

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con51417.80E-54
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K06689UBE2D, UBC4, UBC5 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
MAPK signaling pathway - flymap04013
Toll and Imd signaling pathwaymap04624

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf214.462
SRR3591706second leaf126.558
SRR3591707mature leaf149.813
SRR3591708Shoot apex141.279
SRR3591709Stem332.523
SRR3591710White floral bud218.856
SRR3591711White flower220.857
SRR3591712Green floral bud205.996
SRR3591713Yellow flower253.123
SRP173429 SRR8316895Juvenile bud stage 100.653
SRR8316896Juvenile bud stage 122.539
SRR8316897Juvenile bud stage 60.187
SRR8316894Third green stage 56.662
SRR8316900Third green stage 181.085
SRR8316901Third green stage 185.060
SRR8316898Complete white stage 106.665
SRR8316899Complete white stage 332.199
SRR8316903Complete white stage 155.896
SRR8316902Silver flowering stage119.447
SRR8316904Silver flowering stage142.174
SRR8316905Silver flowering stage76.270
SRR8316906Gold flowering stage 330.839
SRR8316907Gold flowering stage 322.017
SRR8316908Gold flowering stage 301.348
SRP132670SRR6706286Control320.858
SRR6706287Light intensity 50%293.851
SRR6706288Light intensity 20%320.214
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1126.579
CNS0095593Slightly white alabastrum(diploid) 2138.253
CNS0095594Slightly white alabastrum(diploid) 3119.500
CNS0095595Whole white alabastrum(diploid) 2112.970
CNS0095596Whole white alabastrum(diploid) 3132.073
CNS0095597Whole white alabastrum(diploid) 4122.787
CNS0095598Silvery flower (diploied) 1191.421
CNS0095599Silvery flower (diploied) 2181.015
CNS0095600Silvery flower (diploied) 3245.732
CNS0095601Golden flower (diploid) 1202.806
CNS0095602Golden flower (diploid) 2268.006
CNS0095603Golden flower (diploid) 3256.449
CNS0095604Slightly white alabastrum(tetraploid) 196.155
CNS0095605Slightly white alabastrum(tetraploid) 286.813
CNS0095606Slightly white alabastrum(tetraploid) 3144.752
CNS0095607Whole white alabastrum(tetraploid) 182.541
CNS0095608Whole white alabastrum(tetraploid) 287.030
CNS0095609Whole white alabastrum(tetraploid) 3102.820
CNS0095610Silvery flower (tetraploid) 1227.858
CNS0095611Silvery flower (tetraploid) 2213.952
CNS0095612Silvery flower (tetraploid) 3239.754
CNS0095613Golden flower (tetraploid) 1282.789
CNS0095614Golden flower (tetraploid) 2238.643
CNS0095615Golden flower (tetraploid) 3414.130
CRA001975CRR073297Stem 1108.025
CRR073298Stem 2103.268
CRR073299Stem 3116.816
CRR073300Leaf 1139.281
CRR073301Leaf 2143.673
CRR073302Leaf 3131.266
CRR073303Juvenile bud 1150.507
CRR073304Juvenile bud 2145.705
CRR073305Juvenile bud 3155.453
CRR073306Third green 1126.569
CRR073307Third green 2127.822
CRR073308Third green 3124.129
CRR073309Second white 1182.122
CRR073310Second white 2137.950
CRR073311Second white 3132.073
CRR073312Silver flowering 1157.407
CRR073313Silver flowering 2120.183
CRR073314Silver flowering 3101.512
CRR073315Gold flowering 199.990
CRR073316Gold flowering 2121.943
CRR073317Gold flowering 3113.198
CRR073318Tawny withering 1166.716
CRR073319Tawny withering 2178.747
CRR073320Tawny withering 3139.506