Gene detail

Detail information of GWHGAAZE009419

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009629516.1	0	PREDICTED: CBL-interacting protein kinase 2-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9C562\|CIPKA_ARATH	0	CBL-interacting serine/threonine-protein kinase 10
trEMBL	tr\|A0A068U8W8\|A0A068U8W8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP04063.1}
TAIR10	AT5G58380.1	2E-145	SOS3-interacting protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	109860566	109861909	-
GWHAAZE00000002	mRNA	109860566	109861909	-
GWHAAZE00000002	exon	109861022	109861909	-
GWHAAZE00000002	exon	109860809	109860985	-
GWHAAZE00000002	exon	109860566	109860742	-
GWHAAZE00000002	CDS	109861022	109861909	-
GWHAAZE00000002	CDS	109860809	109860985	-
GWHAAZE00000002	CDS	109860566	109860742	-

Transcript Sequence
>GWHTAAZE009429 ATGGAAAGATATGAATTGGGGAGATTACTAGGTCAAGGCACCTTTGCTAAGGTTTACTATGCTAGAAGCATCAGAACTGGACAAAGCGTGGCGATCAAAGTAATAGACAAGGAGAAGATTTTGAGGGTTGGACTCGTTGATCAGATCAAGCGAGAAATATCTGTTATGAGACTTATTAGACACCCTTATATTGTGCAGTTTCATGAAGTTATGGCTACCAAAACCAAGATTTATTTCGTAATCGAATATGCTAAAGGGGGTGAGCTTTTTAACAAGGTGGCTAAAGGAAAGCTAAAGGAGGATATCGCTCGTAAATACTTCCAACAATTAATCAATGCCATTGATTATTGCCACAGTAGGGGCGTCTATCACCGTGATTTAAAACCCGAAAACTTGCTGTTGGATGAGAATGATAATTTAAAGGTTTCTGATTTCGGGTTAAGTGCACTTGCTGAATCGATACGCCAGGATGGGCTACTGCACACCACGTGTGGGACCCCAGCATATGTGGCTCCGGAGGTGATTAATAGAAAAGGTTACGATGGGGCCAAAGCTGATATTTGGTCATGTGGGGTGGTACTTTTTGTTCTATTGGCTGGTTACCTTCCATTTCATGATTCAAATTTAATGGAGATGTATAGGAAGATTGGTAAAGCAGAGTTTAGATTCCCCAGTTGGTTCCCACAAGAAGCAAAAAGGCTAATCTCAAGGATACTGGACCCACATCCCGATACTAGAATTTCAATATCCAAAATTAAGGAAAGTTATTGGTTTAGAAGAGGATTGAACTCTAGACCAAAGAAAACGGATACAGATGCCAATAAAACTAATACAGATGCAGCTTCTACTTCTGGTTCTGGCGAGAATACTACTATGGCTGTAGCTGAGGCATTTGATATTATTGCCCTTTCTGATGGATTTGATCTATCGAGCTTATTTGAGGAACCGTGTCTAAAGAAAGAAACGAGATTCACATCATGGCGACCTGTGCCAGTGATAGTTTCTAAGATTGAAGAAGCAGGTAAGAATTTGAGGTTGAAGGTGAGCAAACGGGATGGAGGGTTGGTCACACCATCGTTTCATATGGTGGAGATGAAGAAATGTAGGGGAGATACGCTAGAATATCAGAAAGTGCTGAAAGAGGGTTTAAGACCCGCTCTTCAAGATATTGTTTGGGCTTGGCAAGGTGAGCAACAGCAGGAGCAACAACAACAAAGCCAGCAGGTGCAGGGGCAGATATAA

Network for GWHGAAZE009419

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	4	258	6.30E-73
PF03822.15	NAF	297	350	6.00E-18

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CAMKL-CHK1

KEGG pathway

KO	Enzyme	pathway	mapID
K07198	PRKAA, AMPK	Apelin signaling pathway	map04371
		FoxO signaling pathway	map04068
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Tight junction	map04530
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		Adipocytokine signaling pathway	map04920
		Oxytocin signaling pathway	map04921
		Axon regeneration	map04361
		Longevity regulating pathway	map04211
		Longevity regulating pathway - multiple species	map04213
		Circadian rhythm	map04710
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.324
	SRR3591706	second leaf	4.664
	SRR3591707	mature leaf	8.534
	SRR3591708	Shoot apex	5.074
	SRR3591709	Stem	12.751
	SRR3591710	White floral bud	13.091
	SRR3591711	White flower	23.528
	SRR3591712	Green floral bud	9.191
	SRR3591713	Yellow flower	44.630
SRP173429	SRR8316895	Juvenile bud stage	4.983
	SRR8316896	Juvenile bud stage	6.082
	SRR8316897	Juvenile bud stage	1.795
	SRR8316894	Third green stage	2.904
	SRR8316900	Third green stage	8.007
	SRR8316901	Third green stage	8.080
	SRR8316898	Complete white stage	5.912
	SRR8316899	Complete white stage	18.778
	SRR8316903	Complete white stage	8.610
	SRR8316902	Silver flowering stage	5.888
	SRR8316904	Silver flowering stage	10.352
	SRR8316905	Silver flowering stage	6.155
	SRR8316906	Gold flowering stage	26.862
	SRR8316907	Gold flowering stage	20.823
	SRR8316908	Gold flowering stage	20.226
SRP132670	SRR6706286	Control	5.113
	SRR6706287	Light intensity 50%	5.604
	SRR6706288	Light intensity 20%	5.927
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.788
	CNS0095593	Slightly white alabastrum(diploid) 2	4.524
	CNS0095594	Slightly white alabastrum(diploid) 3	7.053
	CNS0095595	Whole white alabastrum(diploid) 2	6.432
	CNS0095596	Whole white alabastrum(diploid) 3	5.127
	CNS0095597	Whole white alabastrum(diploid) 4	5.444
	CNS0095598	Silvery flower (diploied) 1	11.419
	CNS0095599	Silvery flower (diploied) 2	8.869
	CNS0095600	Silvery flower (diploied) 3	18.432
	CNS0095601	Golden flower (diploid) 1	13.457
	CNS0095602	Golden flower (diploid) 2	26.456
	CNS0095603	Golden flower (diploid) 3	26.790
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.703
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.085
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.575
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.854
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.333
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.629
	CNS0095610	Silvery flower (tetraploid) 1	17.789
	CNS0095611	Silvery flower (tetraploid) 2	16.416
	CNS0095612	Silvery flower (tetraploid) 3	13.272
	CNS0095613	Golden flower (tetraploid) 1	19.072
	CNS0095614	Golden flower (tetraploid) 2	22.856
	CNS0095615	Golden flower (tetraploid) 3	40.677
CRA001975	CRR073297	Stem 1	5.662
	CRR073298	Stem 2	5.077
	CRR073299	Stem 3	5.528
	CRR073300	Leaf 1	5.252
	CRR073301	Leaf 2	5.303
	CRR073302	Leaf 3	5.425
	CRR073303	Juvenile bud 1	5.056
	CRR073304	Juvenile bud 2	5.719
	CRR073305	Juvenile bud 3	3.921
	CRR073306	Third green 1	2.846
	CRR073307	Third green 2	2.513
	CRR073308	Third green 3	4.943
	CRR073309	Second white 1	3.621
	CRR073310	Second white 2	7.904
	CRR073311	Second white 3	5.266
	CRR073312	Silver flowering 1	6.547
	CRR073313	Silver flowering 2	4.378
	CRR073314	Silver flowering 3	6.385
	CRR073315	Gold flowering 1	3.885
	CRR073316	Gold flowering 2	4.380
	CRR073317	Gold flowering 3	1.576
	CRR073318	Tawny withering 1	10.794
	CRR073319	Tawny withering 2	6.806
	CRR073320	Tawny withering 3	6.431