Gene detail

Detail information of GWHGAAZE009418

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007017059.1	0	SOS3-interacting protein 4 [Theobroma cacao]
Swissprot	tr\|O22932\|CIPKB_ARATH	7E-176	CBL-interacting serine/threonine-protein kinase 11
trEMBL	tr\|A0A061GYZ0\|A0A061GYZ0_THECC	0	SOS3-interacting protein 4 {ECO:0000313\|EMBL:EOY34678.1}
TAIR10	AT2G30360.1	3E-138	SOS3-interacting protein 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	109833081	109834540	+
GWHAAZE00000002	mRNA	109833081	109834540	+
GWHAAZE00000002	exon	109833081	109833755	+
GWHAAZE00000002	exon	109833860	109834540	+
GWHAAZE00000002	five_prime_UTR	109833081	109833140	+
GWHAAZE00000002	CDS	109833141	109833755	+
GWHAAZE00000002	CDS	109833860	109834540	+

Transcript Sequence
>GWHTAAZE009428 TCCAATTTTAAATTCATTCCAAATGCAACTTCACCTCCGTTCGATCTCCGCATCGTTCCAATGAACGACAATGTAGACGTGCAGCAAGGCACGTCTCCACCAACCTTAGAAAATGTCTTATTCGGCAAATACGAGTTTGGAAGACTCCTTGGCCGCGGCTCTTTCGCCAAAGTCTACCTTGCACGAGACATTAACTCCCGCCAGAATGTTGCCATCAAAATCATCAACAAGAACAAAATCGTCAGCACGGCCTTGATGTCCAACATCAAGCGCGAGATCTCTATCATGCGTCGGTTACGCCATCCCAACATTGTCATGCTGTTCGAAGTCCTCGCCACTAAATCGAAGATCTACTTTGTAATGGAATTCGTTAAAGGTGGTGAGCTCTTCGCGAAGATCTCTAAAGGAAAATTCACGGAAGATCTCAGCCGCAAGTACTTCCATCAACTGATCTCCGCTGTCGGATATTGTCATTCTCATGGTGTTTACCACCGCGATCTGAAGCCGGAGAATCTACTCATCGGTGAGAACGGGGATCTGAAGGTTTCAGATTTCGGTCTCAGTGCTGTCACTGGCCAGATCCACAATGACGGTCTGTTGCACACGCTTTGTGGTACGCCTGCCTACGTGGCACCAGAAGTTCTCTCAAAGAAAGGCTACGATGGTGTGAAGGTGGTGGATATTTGGTCATGCGGAGTCATCCTTTTTGTGCTAACAGCCGGTTTTCTACCATTCAATGATTCAAACATGATGGTGATGTATCGTAAGATCTACAAAGGTGATTTTCGGTGTCCCAAATGGATGTCCTCAGATCTTAAAAACCTAGTGTTTCGCTTATTAGAAACCAATCCATCGAAGAGAATTAGCATCAATGAAATTATTCGCCATCCTTGGTTTGCAAAAGACTTCACGGAGATTAAATTTGACAAATTTGACGAAGAAGATCCAGATATAGCCAAGTTTTCAGAAGAAGTATCGACACTGAATGCATTTGATATAATCTCATTTTCCTCGGGTTTGAACCTCGCTGGTTTGTTCAACGATGAGTCCGTGAACTGCGACGAGATGCTCGTGGTGGAGGAGTCGCCGGAGAGAGTTATCGAGAAAGTACATGAGGTTGCAAAGGACGAGACTGTGAGGTTGAAGAGAAAAAGGGATCAATGGGGAGTGGATATGGAAGGGCAAAATGGGGATTTTGCAATGGGGTTGGAGGTTTACCGGTTAACTGATAATTTGGCAGTTGTTGAGGTAAAAAGGAAGAATGGTGATGATGGAGTGTACAACGATTTGTGGACAAAGAAATTTAAGCCGGAGATACTCGGTGGTCGGCGGGAGGATCATGTTTCCGTTGAGTAG

Network for GWHGAAZE009418

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	24	279	1.70E-74
PF03822.15	NAF	306	362	1.90E-16

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CAMKL-CHK1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0007165	biological_process	signal transduction
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.258
	SRR3591706	second leaf	0.472
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	2.109
	SRR3591709	Stem	2.090
	SRR3591710	White floral bud	231.705
	SRR3591711	White flower	10.485
	SRR3591712	Green floral bud	227.746
	SRR3591713	Yellow flower	9.019
SRP173429	SRR8316895	Juvenile bud stage	0.369
	SRR8316896	Juvenile bud stage	6.168
	SRR8316897	Juvenile bud stage	11.068
	SRR8316894	Third green stage	5.668
	SRR8316900	Third green stage	59.741
	SRR8316901	Third green stage	56.099
	SRR8316898	Complete white stage	0.046
	SRR8316899	Complete white stage	1.114
	SRR8316903	Complete white stage	0.237
	SRR8316902	Silver flowering stage	2.277
	SRR8316904	Silver flowering stage	5.394
	SRR8316905	Silver flowering stage	0.909
	SRR8316906	Gold flowering stage	0.243
	SRR8316907	Gold flowering stage	0.280
	SRR8316908	Gold flowering stage	0.527
SRP132670	SRR6706286	Control	45.281
	SRR6706287	Light intensity 50%	47.850
	SRR6706288	Light intensity 20%	43.281
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.532
	CNS0095593	Slightly white alabastrum(diploid) 2	26.716
	CNS0095594	Slightly white alabastrum(diploid) 3	43.651
	CNS0095595	Whole white alabastrum(diploid) 2	116.441
	CNS0095596	Whole white alabastrum(diploid) 3	128.052
	CNS0095597	Whole white alabastrum(diploid) 4	168.856
	CNS0095598	Silvery flower (diploied) 1	6.001
	CNS0095599	Silvery flower (diploied) 2	22.238
	CNS0095600	Silvery flower (diploied) 3	4.005
	CNS0095601	Golden flower (diploid) 1	6.472
	CNS0095602	Golden flower (diploid) 2	4.438
	CNS0095603	Golden flower (diploid) 3	3.993
	CNS0095604	Slightly white alabastrum(tetraploid) 1	155.498
	CNS0095605	Slightly white alabastrum(tetraploid) 2	186.265
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.434
	CNS0095607	Whole white alabastrum(tetraploid) 1	396.141
	CNS0095608	Whole white alabastrum(tetraploid) 2	423.322
	CNS0095609	Whole white alabastrum(tetraploid) 3	185.204
	CNS0095610	Silvery flower (tetraploid) 1	5.987
	CNS0095611	Silvery flower (tetraploid) 2	18.664
	CNS0095612	Silvery flower (tetraploid) 3	48.796
	CNS0095613	Golden flower (tetraploid) 1	10.224
	CNS0095614	Golden flower (tetraploid) 2	2.105
	CNS0095615	Golden flower (tetraploid) 3	22.813
CRA001975	CRR073297	Stem 1	9.425
	CRR073298	Stem 2	9.687
	CRR073299	Stem 3	3.030
	CRR073300	Leaf 1	93.283
	CRR073301	Leaf 2	50.755
	CRR073302	Leaf 3	32.759
	CRR073303	Juvenile bud 1	91.585
	CRR073304	Juvenile bud 2	66.590
	CRR073305	Juvenile bud 3	6.516
	CRR073306	Third green 1	33.209
	CRR073307	Third green 2	38.747
	CRR073308	Third green 3	35.738
	CRR073309	Second white 1	2.042
	CRR073310	Second white 2	9.213
	CRR073311	Second white 3	10.302
	CRR073312	Silver flowering 1	35.455
	CRR073313	Silver flowering 2	30.790
	CRR073314	Silver flowering 3	22.114
	CRR073315	Gold flowering 1	45.766
	CRR073316	Gold flowering 2	14.574
	CRR073317	Gold flowering 3	9.026
	CRR073318	Tawny withering 1	49.667
	CRR073319	Tawny withering 2	42.144
	CRR073320	Tawny withering 3	39.482