Detail information of GWHGAAZE009375


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002275261.11.1173E-109PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform X1 [Vitis vinifera]
trEMBLtr|A0A068ULT9|A0A068ULT9_COFCA2E-109Coffea canephora DH200=94 genomic scaffold, scaffold_36 {ECO:0000313|EMBL:CDP09237.1}
TAIR10AT1G07080.18E-70Thioredoxin superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene109012495109015539-
GWHAAZE00000002mRNA109012495109015539-
GWHAAZE00000002exon109012495109012710-
GWHAAZE00000002exon109013180109013272-
GWHAAZE00000002exon109013971109014111-
GWHAAZE00000002exon109014401109014466-
GWHAAZE00000002exon109015258109015539-
GWHAAZE00000002CDS109015258109015539-
GWHAAZE00000002CDS109014401109014466-
GWHAAZE00000002CDS109013971109014111-
GWHAAZE00000002CDS109013180109013272-
GWHAAZE00000002CDS109012495109012710-
Transcript Sequence

Network for GWHGAAZE009375

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03227.17GILT421444.20E-28
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K08059IFI30, GILT Antigen processing and presentation map04612

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf260.371
SRR3591706second leaf332.169
SRR3591707mature leaf600.793
SRR3591708Shoot apex264.062
SRR3591709Stem395.331
SRR3591710White floral bud277.165
SRR3591711White flower318.224
SRR3591712Green floral bud289.409
SRR3591713Yellow flower279.778
SRP173429 SRR8316895Juvenile bud stage 149.693
SRR8316896Juvenile bud stage 220.368
SRR8316897Juvenile bud stage 71.153
SRR8316894Third green stage 91.448
SRR8316900Third green stage 259.594
SRR8316901Third green stage 255.544
SRR8316898Complete white stage 156.671
SRR8316899Complete white stage 487.138
SRR8316903Complete white stage 230.164
SRR8316902Silver flowering stage128.488
SRR8316904Silver flowering stage195.133
SRR8316905Silver flowering stage92.984
SRR8316906Gold flowering stage 326.093
SRR8316907Gold flowering stage 307.367
SRR8316908Gold flowering stage 326.218
SRP132670SRR6706286Control420.257
SRR6706287Light intensity 50%386.340
SRR6706288Light intensity 20%415.527
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1224.339
CNS0095593Slightly white alabastrum(diploid) 2208.476
CNS0095594Slightly white alabastrum(diploid) 3205.993
CNS0095595Whole white alabastrum(diploid) 2214.884
CNS0095596Whole white alabastrum(diploid) 3176.126
CNS0095597Whole white alabastrum(diploid) 4215.119
CNS0095598Silvery flower (diploied) 1360.961
CNS0095599Silvery flower (diploied) 2334.043
CNS0095600Silvery flower (diploied) 3526.899
CNS0095601Golden flower (diploid) 1388.970
CNS0095602Golden flower (diploid) 2580.801
CNS0095603Golden flower (diploid) 3565.028
CNS0095604Slightly white alabastrum(tetraploid) 1188.676
CNS0095605Slightly white alabastrum(tetraploid) 2157.346
CNS0095606Slightly white alabastrum(tetraploid) 3378.552
CNS0095607Whole white alabastrum(tetraploid) 1117.264
CNS0095608Whole white alabastrum(tetraploid) 2117.173
CNS0095609Whole white alabastrum(tetraploid) 3282.371
CNS0095610Silvery flower (tetraploid) 1551.226
CNS0095611Silvery flower (tetraploid) 2684.659
CNS0095612Silvery flower (tetraploid) 3685.664
CNS0095613Golden flower (tetraploid) 1320.570
CNS0095614Golden flower (tetraploid) 2484.618
CNS0095615Golden flower (tetraploid) 3439.463
CRA001975CRR073297Stem 1292.491
CRR073298Stem 2256.382
CRR073299Stem 3365.515
CRR073300Leaf 1311.353
CRR073301Leaf 2298.467
CRR073302Leaf 3414.559
CRR073303Juvenile bud 1468.923
CRR073304Juvenile bud 2456.036
CRR073305Juvenile bud 3555.324
CRR073306Third green 1271.446
CRR073307Third green 2324.577
CRR073308Third green 3284.508
CRR073309Second white 1615.777
CRR073310Second white 2421.122
CRR073311Second white 3351.991
CRR073312Silver flowering 1409.216
CRR073313Silver flowering 2557.720
CRR073314Silver flowering 3401.002
CRR073315Gold flowering 1949.935
CRR073316Gold flowering 2807.166
CRR073317Gold flowering 31039.534
CRR073318Tawny withering 1598.471
CRR073319Tawny withering 2480.651
CRR073320Tawny withering 3424.576