Gene detail

Detail information of GWHGAAZE009354

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010907410.1	PREDICTED: clathrin heavy chain 1-like [Elaeis guineensis]
Swissprot	tr\|Q0WNJ6\|CLAH1_ARATH	Clathrin heavy chain 1
trEMBL	tr\|I1MZ13\|I1MZ13_SOYBN	Clathrin heavy chain {ECO:0000256\|PIRNR:PIRNR002290}
TAIR10	AT3G11130.1	Clathrin, heavy chain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	108536187	108553724	+
GWHAAZE00000002	mRNA	108536187	108553724	+
GWHAAZE00000002	exon	108536187	108536244	+
GWHAAZE00000002	exon	108538866	108539070	+
GWHAAZE00000002	exon	108539806	108539862	+
GWHAAZE00000002	exon	108540055	108540182	+
GWHAAZE00000002	exon	108541013	108541111	+
GWHAAZE00000002	exon	108541248	108541356	+
GWHAAZE00000002	exon	108541521	108541600	+
GWHAAZE00000002	exon	108541694	108541921	+
GWHAAZE00000002	exon	108542013	108542078	+
GWHAAZE00000002	exon	108543199	108543315	+
GWHAAZE00000002	exon	108543578	108543775	+
GWHAAZE00000002	exon	108543980	108544096	+
GWHAAZE00000002	exon	108544335	108544394	+
GWHAAZE00000002	exon	108544652	108544738	+
GWHAAZE00000002	exon	108545045	108545128	+
GWHAAZE00000002	exon	108545229	108545363	+
GWHAAZE00000002	exon	108545472	108545534	+
GWHAAZE00000002	exon	108545610	108545714	+
GWHAAZE00000002	exon	108545793	108545905	+
GWHAAZE00000002	exon	108546006	108546258	+
GWHAAZE00000002	exon	108546430	108546566	+
GWHAAZE00000002	exon	108546645	108546923	+
GWHAAZE00000002	exon	108547320	108548322	+
GWHAAZE00000002	exon	108548897	108549382	+
GWHAAZE00000002	exon	108549705	108549875	+
GWHAAZE00000002	exon	108550255	108550440	+
GWHAAZE00000002	exon	108550775	108550897	+
GWHAAZE00000002	exon	108552442	108552552	+
GWHAAZE00000002	exon	108553578	108553724	+
GWHAAZE00000002	five_prime_UTR	108536187	108536199	+
GWHAAZE00000002	CDS	108536200	108536244	+
GWHAAZE00000002	CDS	108538866	108539070	+
GWHAAZE00000002	CDS	108539806	108539862	+
GWHAAZE00000002	CDS	108540055	108540182	+
GWHAAZE00000002	CDS	108541013	108541111	+
GWHAAZE00000002	CDS	108541248	108541356	+
GWHAAZE00000002	CDS	108541521	108541600	+
GWHAAZE00000002	CDS	108541694	108541921	+
GWHAAZE00000002	CDS	108542013	108542078	+
GWHAAZE00000002	CDS	108543199	108543315	+
GWHAAZE00000002	CDS	108543578	108543775	+
GWHAAZE00000002	CDS	108543980	108544096	+
GWHAAZE00000002	CDS	108544335	108544394	+
GWHAAZE00000002	CDS	108544652	108544738	+
GWHAAZE00000002	CDS	108545045	108545128	+
GWHAAZE00000002	CDS	108545229	108545363	+
GWHAAZE00000002	CDS	108545472	108545534	+
GWHAAZE00000002	CDS	108545610	108545714	+
GWHAAZE00000002	CDS	108545793	108545905	+
GWHAAZE00000002	CDS	108546006	108546258	+
GWHAAZE00000002	CDS	108546430	108546566	+
GWHAAZE00000002	CDS	108546645	108546923	+
GWHAAZE00000002	CDS	108547320	108548322	+
GWHAAZE00000002	CDS	108548897	108549382	+
GWHAAZE00000002	CDS	108549705	108549875	+
GWHAAZE00000002	CDS	108550255	108550440	+
GWHAAZE00000002	CDS	108550775	108550897	+
GWHAAZE00000002	CDS	108552442	108552552	+
GWHAAZE00000002	CDS	108553578	108553724	+

Transcript Sequence
>GWHTAAZE009364 GATCTAGGTCAAAATGGCGGCTGCAAATGCTCCCATCACTATGAGGGAGGTCCTCACGTTGCCTAGTATTGGAGTCAATTCACAATTTATTACGTTCACCCATGTTACCATGGAATCAGATAAGTACATTTGTGTTAGGGAAACCTCACCCCAAAACAGTGTTGTTATCGTCGATATGAACATGCCGATGCAGCCATTGAGAAGACCAATCACTGCCGACTCAGCTTTGATGAATCCAAATTCCAGAATCCTCGCTCTGAAAGATTGTATTCTGGAAGTGGGTTACCCCGAAAATGCTGGGGCTAGTCACGCAGACTTCGGCGATTCTGAGCCTCAGAAGATGTTTGAGCGAACAGCTAATTTGGCAAACAATCAAATAATTAACTATCGCTGTGATCCTACTGAAAAATGGTTAGTTCTGATTGGAATTGCTCCTGGTTCACAAGAGAGGCCACAACTGGTGAAAGGGAGTATGCAGCTTTTCTCTGTGGATCAGCAACGTAGTCAGGCTCTTGAAGCGCATGCTGCATCATTTGCCTCATTTAAAGTTGCAGGAAATGAGACCCCTTCAATTCTCATTTGTTTTGCCTCAAAGACTACTAATGCTGGACAAATCACATCAAAGTTGCATGTTATTGAGCTTGGTGCTCAGCCAGGAAAACCTGCATTTACAAAGAAACAAGCTGACCTGTTCTTTCCTCCGGATTTTGCTGATGACTTTCCAGTGGCAATGCAGATATCACACAAGTACAGTTTGATATACGTGATCACGAAGCTTGGGCTTCTATTTGTATATGACCTAGAAACAGCTACTGCTGTTTATAGAAACAGAATTAGTCCAGATCCTATATTTTTGACAAGCGAGGCTTCCTCGATTGGTGGCTTTTATGCTGTCAATAGGCGTGGCCAGGTGTTGCTTGCCACTGTAAATGAAGCAACGATTGTGCCTTTTGTCAGTGGCCAGTTAAATAATTTGGAGCTTGCTGTTAATCTTGCCAAAAGAGGAAACCTTCCTGGAGCAGAAAACCTGGTTGTTCAACGTTTCCAAGAATTGTTTGCTCAGACCAAGTATAAAGAAGCGGCAGAACTTGCTGCGGATTCCCCACAGGGTATCCTCCGCACCTCTGACACTGTTGCTAAATTTCAGAGTGTTCCAGTACAAGCTGGGCAGACACCACCTTTGCTGCAGTACTTTGGAACTCTGTTAACAAAAGGGAAACTCAATGCATTTGAATCGTTGGAGTTATCACGATTGGTTGTTAATCAGAACAAAAAGAATCTTTTGGAGAATTGGTTGGCAGAGGACAAGCTTGAATGTAGCGAGGAGCTTGGAGACCTTGTGAAGACAGTGGATAATGACCTTGCACTAAAGGTTTATATTAAAGCACGGGCAACTCCGAAAGTTGTTGCTGCATTTGCTGAGAGGAGGGAGTTTGACAAAATTCTTATATATTCGAAGCAGGTGGGATATGCTCCTGATTATTTGTTTCTTCTGCAAACAATTTTGAGATCAGACCCCCAGGGGGCTGTTAATTTTGCTTTAATGATGTCCCAAATGGAGGGGGGTTGCCCAGTTGACTACAACACAATCACAGATCTATTCCTTCAGAGGAACCTGATTCGTGAGGCAACAGCTTTTCTTTTGGATGTTCTGAAGCCAAATTTGCCCGAGCATGGGTTTCTTCAAACAAAGGTTTTGGAAATAAATCTGGTTACATTTCCAAATGTGGCTGATGCTATCTTAGCAAATGGGATGTTTAGTCACTATGATCGCCCTCGTATTGCACAACTATGTGAAAAAGCTGGTCTATTTGTGCGAGCCCTTCAGCATTATACCGAATTGCAAGATATAAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAGTCTCTTGTTGAGTTCTTTGGAACCCTTTCCCAAGAATGGGCCCTTGAGTGCATGAAAGATCTTCTAGTCGTCAATCTTAGGGGCAATCTTCAGATAATTGTGCAGGTTGCTAAAGAATATTCTGAGCAATTGGGCGTTGGGGCCTGCATTAAATTGTTTGAGCAGTTCAAATCGTATGAGGGATTATACTTTTTCTTAGGATCATATTTGAGCTCAAGCGAGGACCCTGATATCCACTTTAAGTATATTGAGGCAGCTGCTAAAACAGGGCAAATCAAGGAGGTGGAACGAGTTACTCGGGAATCAAACTTTTACGACCCAGAAAAGGCGAAAAACTTTTTAATGGAAGCAAAACTACCAGATGCACGCCCTCTGATTAACGTCTGTGACCGTTTTGGTTTTGTTCCTGACTTAACCCATTATCTATACACGAGTAACATGCTTCGGTATATTGAAGGTTATGTTCAAAAGGTCAATCCGGGAAATGCACCTCTAGTTGTAGGGCAGCTGCTAGATGACGAGTGCCCTGAAGATTTCATTAAAGGTCTTATTCTTTCAGTTCGTTCACTTCTCCCAGTTGAACCACTAGTTGAAGAATGTGAGAAGAGGAACCGTCTCCGTTTGCTTACTCAGTTCCTTGAGCATCTTGTAAGTGAGGGAAGCCAAGATGTACATGTTCACAATGCTCTTGGTAAAATCATCATAGATAGCAATAACAATCCCGAGCATTTTCTCACCACCAACCCCTACTATGATTCACTTGTTGTGGGTAAGTACTGCGAGAAACGGGACCCCACTCTTGCAGTTGTTGCTTATCAAAGAGGACAGTGCGATGAAGAACTTATCAATGTCACGAATAAGAACTCCTTGTTCAAACTGCAGGCTAGATATGTGGTGGATAGAATGGAAGGTGACCTATGGGAGAAAGTTCTTAGTCCTGATAACGAGTATAGAAGGCAGCTGATTGATCAAGTTGTCTCTACTGCTTTACCTGAAAGCAAGAGCCCAGAACAAGTTTCTGCTGCCGTTAAAGCCTTTATGACAGCTGATCTTCCACATGAACTGATTGAACTTCTCGAGAAGATTGTACTTCAAAACTCGGCTTTTAGTGGAAACTTTAATCTGCAGAATTTGTTGATCCTGACCGCAATCAAGGCCGATCCATCACGGGTCATGGATTACATTAATCGTCTGGACAACTTTGACGGACCTGCGGTTGGGGAGGTGGCTGTGGAAGCGCAGTTGTATGAAGAAGCAGTTGCCATCTTCAAAAAGTTCAATTTGAATGTCCAGGCTGTTAATGTCCTGCTAGATAACATTCAGAACATTGATAGAGCAGTAGAATTTGCATTCCGAGTTGAAGAAGATGCCGTTTGGAGCCAGGTGGCCAAAGCACAACTCAGAGAGGGGCTAGTGAGTGATGCAATTGAGTCATTTATTCGTGCTGACGATGCGACCCAATTCTTAGATGTTATACGGGCCTCTGAGAATTCTGACGTGTACCATGACTTGGTGAAATACCTTCTGATGGTTAGACAAAAGGTGAAAGAGCCCAAGGTGGACAGCGAACTCATTTACGCTTATGCCAAGATCGATAGGCTAAGTGAGGTTGAAGAATTTATTCTCATGCCAAATGTTGCTAATCTACAAAGTGTAGGGGATCGGTTATATGATGAAGCCTTATATGAGGCAGCAAAGATCATATTCACGTTTATTTCTAACTGGGCTAAGCTGGCTAGTACACTTGTGAAGCTTGGTCAGTTCCAAGGCGCCGTTGATGCTGCTCGTAAAGCCAACAGCTCAAAGACATGGAAACAAGTTTGCTTTGCCTGTGTTGATGCTGAGGAGTACCGTTTGGCCCAGATTTGTGGGCTCAACATCATCATACAGGTGGATGATTTGGAGGAGGTCAGCGAATATTACCAAAACAGGGGATGCTTTAGCGAGCTGATTTCTCTCATGGAAAGTGGTCTAGGGTTGGAACGCGCGCATATGGGCATTTTTACTGAACTGGGAGTTCTGTATGCAAGATACCGTCCTGAGAAGCTTATGGAGCACATTAAACTCTTTTCAACTCGTCTCAACATTCCTAAACTTATACGAGCTTGTGATGAACAGCAGCACTGGACCGAATTAACTTACCTGTATATCCAATACGATGAGTTTGACAATGCGGCAACTACTGTAATGAACCATTCCCCTGAAGCGTGGGACCACATGCAGTTTAAGGATGTGGTGGCGAAAGTTGCAAACGTGGAACTCTACTACAAGGCTGTGCACTTTTACTTGGAAGAACATCCTGATCTTATAAATGATCTCCTTAATGTGCTTGCTCTTCGCGTAGACCATACACGTGTTGTGGACATAATGCGGAAGGCTGGTCACCTCTTGCTTGTGAAGCCATATATGATTGCAGTACAAAGCACCAATGTGGCTGCTGTGAATGAAGCACTCAATGAAATTTATGTTGAGGAGGAGGATTATGACAGGCTTCGTGAATCAATAGATCTTCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGATTGAGAAACACGAGCTTCTTGAAATGAGGCGGGTAGCGGCATATATCTATAAGAAAGCCGGTAGGTGGAAGCAATCCATTGCATTGTCGAAGAAAGACAATCTTTACAAAGATGCTATGGAGACATGTTCACAATCTGGTGACCGGGAACTTTCTGAGGAGTTGCTTGTATATTTCATTGAGCAAGGAAAGAAAGAGTGCTTTGCATCTTGCCTTTTCGTCTGTTACGATTTAATCCGCCCGGATATTGTTCTAGAGCTTGCATGGATGAATAATATGATCGACTTCGCCTTCCCGTATCTTTTGCAGTTTATTCGCGAGTACACTGGCAAAGTAGATGAGCTTATCAAGGCAAAACTTGAGGCTCTTAGCGAGGTGAAAGAGAAAGAAAAGGAGGAGAAGGACATGGTTGCACAGCAGAATATGTACGCGCAATTGCTGCCCCTTGCTTTGCCGGCCCCGCCGATGCCAGGAATGGGGGGAGGATATGGTCCTCCACCACCAATGGGTGCAATGGGCATGCCCCCAATGCCTGGTTATGGTATGCCCCCGATGGGCTCCTACTGA

Network for GWHGAAZE009354

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01394.21	Clathrin_propel	22	56	7.70E-06
PF01394.21	Clathrin_propel	117	160	8.20E-10
PF09268.11	Clathrin-link	307	330	8.60E-09
PF13838.7	Clathrin_H_link	332	397	5.30E-28
PF00637.21	Clathrin	520	653	9.50E-22
PF00637.21	Clathrin	664	803	6.70E-21
PF00637.21	Clathrin	813	946	9.30E-28
PF00637.21	Clathrin	956	1094	3.80E-32
PF00637.21	Clathrin	1110	1242	8.00E-27
PF00637.21	Clathrin	1256	1394	8.30E-28
PF00637.21	Clathrin	1403	1542	3.90E-28

Protein Sequence

>GWHPAAZE009359
MAAANAPITMREVLTLPSIGVNSQFITFTHVTMESDKYICVRETSPQNSVVIVDMNMPMQPLRRPITADSALMNPNSRILALKDCILEVGYPENAGASHADFGDSEPQKMFERTANLANNQIINYRCDPTEKWLVLIGIAPGSQERPQLVKGSMQLFSVDQQRSQALEAHAASFASFKVAGNETPSILICFASKTTNAGQITSKLHVIELGAQPGKPAFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEASSIGGFYAVNRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAADSPQGILRTSDTVAKFQSVPVQAGQTPPLLQYFGTLLTKGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKVYIKARATPKVVAAFAERREFDKILIYSKQVGYAPDYLFLLQTILRSDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLFVRALQHYTELQDIKRVIVNTHAIEPQSLVEFFGTLSQEWALECMKDLLVVNLRGNLQIIVQVAKEYSEQLGVGACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKAKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSLVVGKYCEKRDPTLAVVAYQRGQCDEELINVTNKNSLFKLQARYVVDRMEGDLWEKVLSPDNEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAVAIFKKFNLNVQAVNVLLDNIQNIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRASENSDVYHDLVKYLLMVRQKVKEPKVDSELIYAYAKIDRLSEVEEFILMPNVANLQSVGDRLYDEALYEAAKIIFTFISNWAKLASTLVKLGQFQGAVDAARKANSSKTWKQVCFACVDAEEYRLAQICGLNIIIQVDDLEEVSEYYQNRGCFSELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWTELTYLYIQYDEFDNAATTVMNHSPEAWDHMQFKDVVAKVANVELYYKAVHFYLEEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMIAVQSTNVAAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETCSQSGDRELSEELLVYFIEQGKKECFASCLFVCYDLIRPDIVLELAWMNNMIDFAFPYLLQFIREYTGKVDELIKAKLEALSEVKEKEKEEKDMVAQQNMYAQLLPLALPAPPMPGMGGGYGPPPPMGAMGMPPMPGYGMPPMGSY

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04646	CLTC	Endocytosis	map04144
		Lysosome	map04142
		Endocrine and other factor-regulated calcium reabsorption	map04961
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0071439	cellular_component	clathrin complex
GO:0030130	cellular_component	clathrin coat of trans-Golgi network vesicle
GO:0030132	cellular_component	clathrin coat of coated pit
GO:0032051	molecular_function	clathrin light chain binding
GO:0005515	molecular_function	protein binding
GO:0005198	molecular_function	structural molecule activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	90.723
	SRR3591706	second leaf	41.355
	SRR3591707	mature leaf	46.110
	SRR3591708	Shoot apex	57.267
	SRR3591709	Stem	74.224
	SRR3591710	White floral bud	74.329
	SRR3591711	White flower	80.481
	SRR3591712	Green floral bud	59.270
	SRR3591713	Yellow flower	54.845
SRP173429	SRR8316895	Juvenile bud stage	37.499
	SRR8316896	Juvenile bud stage	48.664
	SRR8316897	Juvenile bud stage	22.969
	SRR8316894	Third green stage	24.467
	SRR8316900	Third green stage	55.654
	SRR8316901	Third green stage	51.203
	SRR8316898	Complete white stage	16.618
	SRR8316899	Complete white stage	57.074
	SRR8316903	Complete white stage	52.228
	SRR8316902	Silver flowering stage	27.924
	SRR8316904	Silver flowering stage	49.086
	SRR8316905	Silver flowering stage	21.250
	SRR8316906	Gold flowering stage	69.216
	SRR8316907	Gold flowering stage	69.794
	SRR8316908	Gold flowering stage	70.735
SRP132670	SRR6706286	Control	53.463
	SRR6706287	Light intensity 50%	58.714
	SRR6706288	Light intensity 20%	61.336
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.640
	CNS0095593	Slightly white alabastrum(diploid) 2	25.723
	CNS0095594	Slightly white alabastrum(diploid) 3	22.101
	CNS0095595	Whole white alabastrum(diploid) 2	22.452
	CNS0095596	Whole white alabastrum(diploid) 3	21.388
	CNS0095597	Whole white alabastrum(diploid) 4	23.441
	CNS0095598	Silvery flower (diploied) 1	46.000
	CNS0095599	Silvery flower (diploied) 2	39.294
	CNS0095600	Silvery flower (diploied) 3	77.371
	CNS0095601	Golden flower (diploid) 1	42.886
	CNS0095602	Golden flower (diploid) 2	80.339
	CNS0095603	Golden flower (diploid) 3	76.658
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.449
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.134
	CNS0095606	Slightly white alabastrum(tetraploid) 3	75.696
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.313
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.416
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.244
	CNS0095610	Silvery flower (tetraploid) 1	67.562
	CNS0095611	Silvery flower (tetraploid) 2	72.277
	CNS0095612	Silvery flower (tetraploid) 3	53.571
	CNS0095613	Golden flower (tetraploid) 1	28.651
	CNS0095614	Golden flower (tetraploid) 2	53.872
	CNS0095615	Golden flower (tetraploid) 3	66.134
CRA001975	CRR073297	Stem 1	63.307
	CRR073298	Stem 2	56.054
	CRR073299	Stem 3	47.383
	CRR073300	Leaf 1	66.401
	CRR073301	Leaf 2	52.761
	CRR073302	Leaf 3	45.903
	CRR073303	Juvenile bud 1	51.031
	CRR073304	Juvenile bud 2	34.451
	CRR073305	Juvenile bud 3	75.685
	CRR073306	Third green 1	25.633
	CRR073307	Third green 2	17.356
	CRR073308	Third green 3	27.504
	CRR073309	Second white 1	26.753
	CRR073310	Second white 2	32.354
	CRR073311	Second white 3	42.467
	CRR073312	Silver flowering 1	38.611
	CRR073313	Silver flowering 2	39.186
	CRR073314	Silver flowering 3	34.679
	CRR073315	Gold flowering 1	22.138
	CRR073316	Gold flowering 2	42.053
	CRR073317	Gold flowering 3	33.072
	CRR073318	Tawny withering 1	48.867
	CRR073319	Tawny withering 2	41.655
	CRR073320	Tawny withering 3	42.073