Gene detail

Detail information of GWHGAAZE009347

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007016097.1	Phosphatidylinositol-speciwc phospholipase C4 [Theobroma cacao]
Swissprot	tr\|Q944C1\|PLCD4_ARATH	Phosphoinositide phospholipase C 4
trEMBL	tr\|A0A061GW77\|A0A061GW77_THECC	Phosphoinositide phospholipase C {ECO:0000256\|RuleBase:RU361133}
TAIR10	AT5G58700.1	phosphatidylinositol-speciwc phospholipase C4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	108276235	108281172	+
GWHAAZE00000002	mRNA	108276235	108281172	+
GWHAAZE00000002	exon	108276235	108276555	+
GWHAAZE00000002	exon	108277425	108277621	+
GWHAAZE00000002	exon	108278375	108278510	+
GWHAAZE00000002	exon	108278598	108278840	+
GWHAAZE00000002	exon	108279331	108279557	+
GWHAAZE00000002	exon	108279702	108279819	+
GWHAAZE00000002	exon	108279954	108280088	+
GWHAAZE00000002	exon	108280192	108280278	+
GWHAAZE00000002	exon	108280861	108281172	+
GWHAAZE00000002	CDS	108276235	108276555	+
GWHAAZE00000002	CDS	108277425	108277621	+
GWHAAZE00000002	CDS	108278375	108278510	+
GWHAAZE00000002	CDS	108278598	108278840	+
GWHAAZE00000002	CDS	108279331	108279557	+
GWHAAZE00000002	CDS	108279702	108279819	+
GWHAAZE00000002	CDS	108279954	108280088	+
GWHAAZE00000002	CDS	108280192	108280278	+
GWHAAZE00000002	CDS	108280861	108281154	+
GWHAAZE00000002	three_prime_UTR	108281155	108281172	+

Transcript Sequence
>GWHTAAZE009357 AGGAAAATGGGGAGTTATAGGATATGTATGTGCTTTACTAGGAAATTCAGAGTCCATGAAGCTGAGCCACCTGCAGATGTGAAAGAGGCCTTCAAGTTATACTCCGACGATGGGCTCCACATGACGGCGGAGCAGCTCCGCCGCTTCCTTAATGAGGTCCAGGGAGACGCCGGAGCTACGATCTCCGATGCCGACCAAATAGTGCAGCAGATTCTGCATAAGCGGCACCATATTGCCAAATTCACGAGGAATACTCTCACTCTTGATGATTTCCATCACTATCTCTTCACTTCTGATCTCAATCCTCCTATCAGATCTCAGGTGCACCAAGATATGAGCCTACCGTTGTCCCATTATTTCATATACACGGGCCACAATTCCTACTTGACTGGAAACCAACTGAGCAGTGATTGCAGTGATGTCCCAATCATTAAGGCACTCAAAGGAGGTGTGAGAGTAATAGAACTTGATATATGGCCTAACTCGACAAAAGACGACGTCCACGTTCTTCATGGAAGGACTCTGACAACTCCGGTGGAACTAATAAGATGTTTGAAGTCAATCAAAGAGCATGCTTTCTCTTCCACTCCATACCCAGTTGTTATAACTCTTGAAGATCACCTTACACCCGATCTTCAGGCCAAAGTAGCTCAGATGGTCACCCAAACATTTGAGAAAATGATATTTTGCCCCGAATCAGAATGTTTAAAAGAATTACCATCGCCGGAAGACTTGAAGTATCGCATTATAATCTCGACCAAACCTCCAAAAGAGTACCTTGAAGCTAAAAATTACAAGGACCAGAAAGGTAGCTCACAGAAGGAAAAGGATTCTGATGAAGATGTATGGGGTGAGGAGCCATCAAGGCTTATGGCCGATCAAGAAAATGGTGATAAGAGTGATAGTGATAAGAGTGACCATAATCAAGAAGTGGAAGAGTGCGACTATGATCAACAGTTGCAGCCTTCACTCGCATACGAGCGTCTAATTGCTATTCGTGCTGGGAAACCAAAAGGTGGGTTAAAGGAGGCGCTAAAGGTCGAAATCAACAAAGTTAGACGCCTTAGTTTGAGTGAACAAGCGCTTGAAAAGGCTGCTGAATCTCATGGAGTGGATGTCGTGAGGTTCACCCAAAAGAATATTTTAAGGGTATACCCTAAAGGAACTCGGTTCAACTCCTCTAATTACAAGCCACAAATTGGTTGGATGCATGGAGCTCAGATGGTTGCATTCAATATGCAGGGATATGGTAGGTCACTCTGGTTGATGCATGGGATGTTCAGATCCAACGGAGGGTGTGGCTATGTGAAAAAGCCTGATTTCTTGATGAAAGCTGGTCCACATAACCAGGTTTTCGATCCTAAGGCAAAGATGCCAGTGAAAGTATATATGGGAGACGGATGGCATTTGGATTTTAAGCAAACTCACTTTGATTTGTATTCCCCACCAGACTTCTACACCAGGATTGGTATAGCTGGAGTGCCCGCAGACGAGATAATGAAGAAAACAAAGAAAAAGGAGGACAACTGGACACCAGTGTGGAATGAAGAGTTTACATTCCCATTAACCGTTCCTGAACTGGCTTTACTTCGAATTGAAGTACACGAGTACGATGTTTCTGAGAAAGATGATTTTGCTGGCCAAACTTGTCTGCCCGTTTCCGAATTGAGACCCGGGATCCATGCAGTGCCCCTTTGTGACCGAAAGGGAGAACAATATAGCTCAGCAAGACTTCTCATGCGGTTCGAGTTTGTTTGAGATTTTCATATTTGTAAC

Network for GWHGAAZE009347

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09279.12	EF-hand_like	26	99	1.20E-06
PF00388.20	PI-PLC-X	112	254	2.20E-47
PF00387.20	PI-PLC-Y	355	441	4.90E-28
PF00168.31	C2	481	557	1.70E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05857	PLCD	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Calcium signaling pathway	map04020
		Phosphatidylinositol signaling system	map04070
		Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0007165	biological_process	signal transduction
GO:0035556	biological_process	intracellular signal transduction
GO:0004435	molecular_function	phosphatidylinositol phospholipase C activity
GO:0008081	molecular_function	phosphoric diester hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.221
	SRR3591706	second leaf	3.948
	SRR3591707	mature leaf	2.212
	SRR3591708	Shoot apex	6.527
	SRR3591709	Stem	6.128
	SRR3591710	White floral bud	3.269
	SRR3591711	White flower	4.770
	SRR3591712	Green floral bud	7.952
	SRR3591713	Yellow flower	6.469
SRP173429	SRR8316895	Juvenile bud stage	5.172
	SRR8316896	Juvenile bud stage	8.134
	SRR8316897	Juvenile bud stage	1.583
	SRR8316894	Third green stage	2.928
	SRR8316900	Third green stage	9.688
	SRR8316901	Third green stage	12.137
	SRR8316898	Complete white stage	2.487
	SRR8316899	Complete white stage	16.319
	SRR8316903	Complete white stage	3.682
	SRR8316902	Silver flowering stage	2.750
	SRR8316904	Silver flowering stage	4.397
	SRR8316905	Silver flowering stage	1.858
	SRR8316906	Gold flowering stage	6.764
	SRR8316907	Gold flowering stage	4.460
	SRR8316908	Gold flowering stage	5.503
SRP132670	SRR6706286	Control	10.432
	SRR6706287	Light intensity 50%	10.037
	SRR6706288	Light intensity 20%	11.674
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.480
	CNS0095593	Slightly white alabastrum(diploid) 2	6.305
	CNS0095594	Slightly white alabastrum(diploid) 3	4.927
	CNS0095595	Whole white alabastrum(diploid) 2	5.320
	CNS0095596	Whole white alabastrum(diploid) 3	5.709
	CNS0095597	Whole white alabastrum(diploid) 4	6.366
	CNS0095598	Silvery flower (diploied) 1	2.273
	CNS0095599	Silvery flower (diploied) 2	3.306
	CNS0095600	Silvery flower (diploied) 3	4.777
	CNS0095601	Golden flower (diploid) 1	1.457
	CNS0095602	Golden flower (diploid) 2	1.670
	CNS0095603	Golden flower (diploid) 3	2.444
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.206
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.438
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.809
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.252
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.398
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.551
	CNS0095610	Silvery flower (tetraploid) 1	5.852
	CNS0095611	Silvery flower (tetraploid) 2	4.571
	CNS0095612	Silvery flower (tetraploid) 3	2.806
	CNS0095613	Golden flower (tetraploid) 1	1.069
	CNS0095614	Golden flower (tetraploid) 2	2.726
	CNS0095615	Golden flower (tetraploid) 3	0.943
CRA001975	CRR073297	Stem 1	13.134
	CRR073298	Stem 2	13.049
	CRR073299	Stem 3	11.317
	CRR073300	Leaf 1	14.934
	CRR073301	Leaf 2	15.821
	CRR073302	Leaf 3	13.406
	CRR073303	Juvenile bud 1	18.960
	CRR073304	Juvenile bud 2	12.066
	CRR073305	Juvenile bud 3	18.035
	CRR073306	Third green 1	2.599
	CRR073307	Third green 2	3.359
	CRR073308	Third green 3	3.998
	CRR073309	Second white 1	4.812
	CRR073310	Second white 2	2.719
	CRR073311	Second white 3	1.045
	CRR073312	Silver flowering 1	1.203
	CRR073313	Silver flowering 2	1.754
	CRR073314	Silver flowering 3	0.993
	CRR073315	Gold flowering 1	4.190
	CRR073316	Gold flowering 2	4.956
	CRR073317	Gold flowering 3	4.751
	CRR073318	Tawny withering 1	10.955
	CRR073319	Tawny withering 2	11.974
	CRR073320	Tawny withering 3	11.105