Gene detail

Detail information of GWHGAAZE009338

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006350833.1	6.9184E-101	PREDICTED: dehydrodolichyl diphosphate synthase 2-like [Solanum tuberosum]
Swissprot	tr\|Q56Y11\|DDPS2_ARATH	1E-92	Dehydrodolichyl diphosphate synthase 2
trEMBL	tr\|M1D4Y6\|M1D4Y6_SOLTU	5E-101	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400081715}
TAIR10	AT5G58770.1	6E-76	Undecaprenyl pyrophosphate synthetase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	108097409	108099686	-
GWHAAZE00000002	mRNA	108097409	108099686	-
GWHAAZE00000002	exon	108097409	108097859	-
GWHAAZE00000002	exon	108098318	108098385	-
GWHAAZE00000002	exon	108099324	108099686	-
GWHAAZE00000002	CDS	108099324	108099686	-
GWHAAZE00000002	CDS	108098318	108098385	-
GWHAAZE00000002	CDS	108097409	108097859	-

Transcript Sequence
>GWHTAAZE009348 ATGCAATCCTTGTGCCTCCCAAGCACTATCTCCTCTTTCAAATACAAACCATCTTCTTCAATTGCAAATGCTCCTAAGAAATATGGCAAGTTTAATAATGCAATATCAGCAGCTTCAAACAAAGAAAGAGGGTTGCCCGATATTAAACTTCCTGCAGGTCTTCGGCCGGAGCTAATGCCGAAACATGTGGCCTTGTTCCCGGACGGGCAGAGGAGGTGGGCCAAGGAGAGAGGATTGACGATGGAAGATGGGGACAGGGCGGGTGCAAACAAGATCAAAGAGTTCGTTAAACTCTGCTCCAAATACGGCATTAAAGTTGTCACTGTTTTTGGTTTCTCTACCGAGAACTGGGTTCGCCCCAAAGTGGAGACTGACATTTTGATGAGGTTATTTGAAGAAGCAGCAGAATCAGAAATGGACCTCTCATTCAGGTTGAACAGTCGAGTCTCAATGATTGGAGATAGGTCAAAGTGGCCCAAGTCTCTGCAGGGAGCGCTCAGTCTAGTAGAGGAAGTTACGAAGAAAAACACGGGACTCCACGTCCTTGGAGGAATTAACTATGGAGGACGATACGACATACTACAAGCATGCAAAAGCGTTGCTAGTAAAGTCAAAGATGGTCTTCTTCAGCTTGAAGACATCAACGAGAGCGTTTTCGAACAAGAACTGGAAACAAAGTGTACTGAGTTCCCTTCTGCTGATCTAGTCATACGAACAAGTGGTGCGCATAGGCTCAGTAACTTCATGCTGTGGCAAGCGGCTTATTCTGAACTCTTCTTTGTAGAGAAATTGTTCCCCGATATCGAGGAAGAAGACTTTATAGAGGCTTTAAAGTCATACCAGAAAAAAGAAAAACGATATGGTGGACAACAAAATTATTAG

Network for GWHGAAZE009338

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01255.20	Prenyltransf	68	288	2.20E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11778	DHDDS, RER2, SRT1	Biosynthesis of secondary metabolites	map01110
K11778	DHDDS, RER2, SRT1	Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0016765	molecular_function	transferase activity, transferring alkyl or aryl (other than methyl) groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.827
	SRR3591706	second leaf	0.131
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	2.095
	SRR3591709	Stem	0.107
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.006
	SRR8316896	Juvenile bud stage	0.204
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.083
	SRR6706287	Light intensity 50%	0.120
	SRR6706288	Light intensity 20%	0.008
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.073
	CNS0095593	Slightly white alabastrum(diploid) 2	0.094
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.093
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.173
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.002
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.147
	CRR073301	Leaf 2	0.005
	CRR073302	Leaf 3	0.093
	CRR073303	Juvenile bud 1	0.107
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.079
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.004
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.099
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.862
	CRR073319	Tawny withering 2	0.351
	CRR073320	Tawny withering 3	0.973