Detail information of GWHGAAZE009333


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268645.12.3221E-173PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
Swissprottr|O04204|RLA01_ARATH1E-16860S acidic ribosomal protein P0-1
trEMBLtr|F6HC03|F6HC03_VITVI9E-174Putative uncharacterized protein {ECO:0000313|EMBL:CCB49883.1}
TAIR10AT3G09200.11E-130Ribosomal protein L10 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene108027910108031718-
GWHAAZE00000002mRNA108027910108031718-
GWHAAZE00000002exon108031617108031718-
GWHAAZE00000002exon108029321108029607-
GWHAAZE00000002exon108028904108028972-
GWHAAZE00000002exon108028594108028692-
GWHAAZE00000002exon108028131108028523-
GWHAAZE00000002exon108027910108028038-
GWHAAZE00000002five_prime_UTR108031617108031718-
GWHAAZE00000002five_prime_UTR108029579108029607-
GWHAAZE00000002CDS108029321108029578-
GWHAAZE00000002CDS108028904108028972-
GWHAAZE00000002CDS108028594108028692-
GWHAAZE00000002CDS108028131108028523-
GWHAAZE00000002CDS108027910108028038-
Transcript Sequence

Network for GWHGAAZE009333

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00466.21Ribosomal_L1091085.00E-18
PF17777.2RL10P_insert1141839.50E-21
PF00428.20Ribosomal_60s2343163.10E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02941RP-LP0, RPLP0 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0042254biological_processribosome biogenesis

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.577
SRR3591709Stem0.608
SRR3591710White floral bud10.919
SRR3591711White flower0.502
SRR3591712Green floral bud115.089
SRR3591713Yellow flower1.467
SRP173429 SRR8316895Juvenile bud stage 36.555
SRR8316896Juvenile bud stage 123.280
SRR8316897Juvenile bud stage 30.735
SRR8316894Third green stage 40.416
SRR8316900Third green stage 94.402
SRR8316901Third green stage 114.846
SRR8316898Complete white stage 0.392
SRR8316899Complete white stage 0.598
SRR8316903Complete white stage 0.356
SRR8316902Silver flowering stage4.443
SRR8316904Silver flowering stage6.351
SRR8316905Silver flowering stage3.016
SRR8316906Gold flowering stage 9.861
SRR8316907Gold flowering stage 16.534
SRR8316908Gold flowering stage 2.418
SRP132670SRR6706286Control31.515
SRR6706287Light intensity 50%32.213
SRR6706288Light intensity 20%28.273
CNP0000432CNS0095592Slightly white alabastrum(diploid) 166.162
CNS0095593Slightly white alabastrum(diploid) 233.753
CNS0095594Slightly white alabastrum(diploid) 379.185
CNS0095595Whole white alabastrum(diploid) 241.492
CNS0095596Whole white alabastrum(diploid) 362.989
CNS0095597Whole white alabastrum(diploid) 437.494
CNS0095598Silvery flower (diploied) 11.914
CNS0095599Silvery flower (diploied) 23.347
CNS0095600Silvery flower (diploied) 31.647
CNS0095601Golden flower (diploid) 10.972
CNS0095602Golden flower (diploid) 20.804
CNS0095603Golden flower (diploid) 30.935
CNS0095604Slightly white alabastrum(tetraploid) 1233.080
CNS0095605Slightly white alabastrum(tetraploid) 2195.565
CNS0095606Slightly white alabastrum(tetraploid) 30.608
CNS0095607Whole white alabastrum(tetraploid) 1207.524
CNS0095608Whole white alabastrum(tetraploid) 2222.994
CNS0095609Whole white alabastrum(tetraploid) 3217.879
CNS0095610Silvery flower (tetraploid) 13.495
CNS0095611Silvery flower (tetraploid) 22.916
CNS0095612Silvery flower (tetraploid) 324.374
CNS0095613Golden flower (tetraploid) 184.965
CNS0095614Golden flower (tetraploid) 24.819
CNS0095615Golden flower (tetraploid) 325.987
CRA001975CRR073297Stem 147.003
CRR073298Stem 243.948
CRR073299Stem 332.050
CRR073300Leaf 127.588
CRR073301Leaf 234.515
CRR073302Leaf 330.407
CRR073303Juvenile bud 120.445
CRR073304Juvenile bud 223.024
CRR073305Juvenile bud 31.519
CRR073306Third green 114.244
CRR073307Third green 216.007
CRR073308Third green 314.841
CRR073309Second white 11.948
CRR073310Second white 23.127
CRR073311Second white 36.429
CRR073312Silver flowering 18.922
CRR073313Silver flowering 213.131
CRR073314Silver flowering 37.524
CRR073315Gold flowering 18.997
CRR073316Gold flowering 20.492
CRR073317Gold flowering 35.606
CRR073318Tawny withering 18.144
CRR073319Tawny withering 28.121
CRR073320Tawny withering 36.126