Gene detail

Detail information of GWHGAAZE009332

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010650925.1	0	PREDICTED: cell division control protein 6 homolog [Vitis vinifera]
Swissprot	tr\|Q710E8\|ORC1A_ARATH	3E-31	Origin of replication complex subunit 1A {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|F6GUT4\|F6GUT4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43492.1}
TAIR10	AT1G07270.1	2E-135	Cell division control, Cdc6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	108019392	108026675	+
GWHAAZE00000002	mRNA	108019392	108026675	+
GWHAAZE00000002	exon	108019392	108019592	+
GWHAAZE00000002	exon	108022191	108022293	+
GWHAAZE00000002	exon	108022386	108022606	+
GWHAAZE00000002	exon	108023702	108023776	+
GWHAAZE00000002	exon	108023861	108023970	+
GWHAAZE00000002	exon	108024153	108024259	+
GWHAAZE00000002	exon	108024389	108024448	+
GWHAAZE00000002	exon	108024970	108025043	+
GWHAAZE00000002	exon	108025283	108025333	+
GWHAAZE00000002	exon	108025483	108025532	+
GWHAAZE00000002	exon	108025734	108025866	+
GWHAAZE00000002	exon	108026103	108026192	+
GWHAAZE00000002	exon	108026520	108026675	+
GWHAAZE00000002	CDS	108019392	108019592	+
GWHAAZE00000002	CDS	108022191	108022293	+
GWHAAZE00000002	CDS	108022386	108022606	+
GWHAAZE00000002	CDS	108023702	108023776	+
GWHAAZE00000002	CDS	108023861	108023970	+
GWHAAZE00000002	CDS	108024153	108024259	+
GWHAAZE00000002	CDS	108024389	108024448	+
GWHAAZE00000002	CDS	108024970	108025043	+
GWHAAZE00000002	CDS	108025283	108025333	+
GWHAAZE00000002	CDS	108025483	108025532	+
GWHAAZE00000002	CDS	108025734	108025866	+
GWHAAZE00000002	CDS	108026103	108026192	+
GWHAAZE00000002	CDS	108026520	108026675	+

Transcript Sequence
>GWHTAAZE009342 ATGCCGACGATCGCTGGAAATTTCTCATCTCCGATCTCCGATGCCGAAATCACTTCCACTCCTCGAAGATTAAGATCTAATTCGTCTCAGCAAAATGCTCCGATCTGTTCAAAGCCACCACCGCCTTCAAAGACGTCCTCGCCTGTAAAGTCTAAATCGCCTCGCCGATGCATCAATGACAGCCCTAGCAGTCCCTCAAAGGGTATTGCGAAGGATTCCGGTGACAAATTTATGAAATTACGCAAATCGCCAGTGAAACGATTGTCGGATTGCTTTATGGATAAACCAATATGGAATCCTAGAGATACGGAGCAATTGAGTGCAGTGAAGGAAACTTTGCATGTATCAACCGCTCCATCTACAATTGTGTGTAGGGAAAACGAGCAAAATCGAATATTGGAATTCTGCAAGCTATGTGTAACGCAAGAGAAGGCTGGGAGCTTGTATGTGTGTGGATGCCCTGGAACCGGAAAATCTCTTTCTATGGAGAAAGTTAAAGACTCCCTAATTCATTGGGCAAAGGAGGAGGACTTTCAGCCACCAGATGTACTAACCATAAATTGTACCTCTCTTACAAACACCTCTGAAATTTTCAACAAGATACTAGGGAATAATCAACCACGGAAGAAAAGCAATGGCCTTGCATCACCTTTAAAGAACCTTCAGATTTCTTATTCCCAAAGCCGGCAGTCATCTGGCATGAAAATGATGTTGGTTATTGCTGATGAGTTGGATTACTTGATTACCAAAGACCGGGCAGTTCTTCATGATCTTTTTATGCTAACAACCTTACCATCCTGCAGATGTATATTGATTGGTATAGCTAATGCTATTGACCTAGCTGATCGATTTCTTCCAAAGCTGCAGTCTTTAAATTGCCAGCCAATGGTTGTAACTTTTCGAGCCTACTCAAAGGATCAGATCATGATGATTCTCCGACAGAGGCTAAGGGTTCTTTCATACACTGTCTTCCAGCCACAAGCATTGGAACTATGTGCTAGAAGAGTTGCAGCTGCATCCGGGGATATGAGGAAAGCTCTTTGTGTTTGCAGGAGTGCAATTGAGATACTAGAAGCTGAGCTAAGAGAATCTACTTGCAATCTAAATACATCGTCACTAGAGAGGGTTATATCTGATCAACAGACAACCGTTTCTGAGATTTTAAAAAAGAAAGACAACAATATTGTGAGGGTTGACCATATGGCTCTTGCTCTGTCAAAGGCATATAGATCACCAATAGTTGACACTATACAGTCCCTCCCACAACATCAGCAGCTAAATAAATCATACTTGGACATTTGCAAATCAACATCAATCCCACCCGTTGGCATAATGGAACTTTCAAGCATGTGCAGAGTGCTAGGTGACCAGGTAAATTATAAAATGCTTCTTCTTTTGCTTCAATTCCTTCTATTTGACCAACTCATATAA

Network for GWHGAAZE009332

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13401.7	AAA_22	144	273	4.90E-18
PF17872.2	AAA_lid_10	325	359	5.30E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02213	CDC6	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006270	biological_process	DNA replication initiation
GO:0051301	biological_process	cell division

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.378
	SRR3591706	second leaf	2.837
	SRR3591707	mature leaf	0.861
	SRR3591708	Shoot apex	12.313
	SRR3591709	Stem	5.044
	SRR3591710	White floral bud	5.458
	SRR3591711	White flower	8.431
	SRR3591712	Green floral bud	6.474
	SRR3591713	Yellow flower	6.576
SRP173429	SRR8316895	Juvenile bud stage	6.679
	SRR8316896	Juvenile bud stage	7.752
	SRR8316897	Juvenile bud stage	11.004
	SRR8316894	Third green stage	3.834
	SRR8316900	Third green stage	11.670
	SRR8316901	Third green stage	10.488
	SRR8316898	Complete white stage	1.637
	SRR8316899	Complete white stage	12.410
	SRR8316903	Complete white stage	2.278
	SRR8316902	Silver flowering stage	2.215
	SRR8316904	Silver flowering stage	3.125
	SRR8316905	Silver flowering stage	1.392
	SRR8316906	Gold flowering stage	7.434
	SRR8316907	Gold flowering stage	7.057
	SRR8316908	Gold flowering stage	14.023
SRP132670	SRR6706286	Control	7.018
	SRR6706287	Light intensity 50%	8.799
	SRR6706288	Light intensity 20%	8.353
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.491
	CNS0095593	Slightly white alabastrum(diploid) 2	7.261
	CNS0095594	Slightly white alabastrum(diploid) 3	3.771
	CNS0095595	Whole white alabastrum(diploid) 2	4.961
	CNS0095596	Whole white alabastrum(diploid) 3	4.387
	CNS0095597	Whole white alabastrum(diploid) 4	6.329
	CNS0095598	Silvery flower (diploied) 1	5.820
	CNS0095599	Silvery flower (diploied) 2	7.569
	CNS0095600	Silvery flower (diploied) 3	6.650
	CNS0095601	Golden flower (diploid) 1	4.913
	CNS0095602	Golden flower (diploid) 2	7.263
	CNS0095603	Golden flower (diploid) 3	7.358
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.030
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.906
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.086
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.965
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.548
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.063
	CNS0095610	Silvery flower (tetraploid) 1	0.794
	CNS0095611	Silvery flower (tetraploid) 2	0.853
	CNS0095612	Silvery flower (tetraploid) 3	2.527
	CNS0095613	Golden flower (tetraploid) 1	1.010
	CNS0095614	Golden flower (tetraploid) 2	0.541
	CNS0095615	Golden flower (tetraploid) 3	0.065
CRA001975	CRR073297	Stem 1	12.181
	CRR073298	Stem 2	8.897
	CRR073299	Stem 3	6.155
	CRR073300	Leaf 1	10.794
	CRR073301	Leaf 2	9.039
	CRR073302	Leaf 3	6.053
	CRR073303	Juvenile bud 1	6.940
	CRR073304	Juvenile bud 2	5.647
	CRR073305	Juvenile bud 3	6.842
	CRR073306	Third green 1	1.500
	CRR073307	Third green 2	1.693
	CRR073308	Third green 3	2.146
	CRR073309	Second white 1	3.806
	CRR073310	Second white 2	7.688
	CRR073311	Second white 3	5.290
	CRR073312	Silver flowering 1	4.031
	CRR073313	Silver flowering 2	3.470
	CRR073314	Silver flowering 3	1.899
	CRR073315	Gold flowering 1	4.195
	CRR073316	Gold flowering 2	8.288
	CRR073317	Gold flowering 3	2.758
	CRR073318	Tawny withering 1	7.281
	CRR073319	Tawny withering 2	9.238
	CRR073320	Tawny withering 3	6.959