Detail information of GWHGAAZE009314


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002280897.10PREDICTED: zinc finger CCCH domain-containing protein 49 [Vitis vinifera]
Swissprottr|Q5SNN4|C3H40_ORYSJ0Zinc finger CCCH domain-containing protein 40
trEMBLtr|A0A067KH31|A0A067KH31_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP34288.1}
TAIR10AT2G29580.17E-169CCCH-type zinc fingerfamily protein with RNA-binding domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene107490119107493788+
GWHAAZE00000002mRNA107490119107493788+
GWHAAZE00000002exon107490119107490223+
GWHAAZE00000002exon107491338107491607+
GWHAAZE00000002exon107492584107492807+
GWHAAZE00000002exon107492939107493788+
GWHAAZE00000002CDS107490119107490223+
GWHAAZE00000002CDS107491338107491607+
GWHAAZE00000002CDS107492584107492807+
GWHAAZE00000002CDS107492939107493788+
Transcript Sequence

Network for GWHGAAZE009314

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16131.6Torus1381945.20E-07
PF00076.23RRM_12302912.50E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12872RBM22, SLT11 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf31.098
SRR3591706second leaf12.135
SRR3591707mature leaf14.173
SRR3591708Shoot apex33.210
SRR3591709Stem32.487
SRR3591710White floral bud36.249
SRR3591711White flower36.204
SRR3591712Green floral bud23.891
SRR3591713Yellow flower24.383
SRP173429 SRR8316895Juvenile bud stage 17.684
SRR8316896Juvenile bud stage 27.216
SRR8316897Juvenile bud stage 12.975
SRR8316894Third green stage 9.091
SRR8316900Third green stage 29.974
SRR8316901Third green stage 31.506
SRR8316898Complete white stage 13.126
SRR8316899Complete white stage 35.611
SRR8316903Complete white stage 23.072
SRR8316902Silver flowering stage17.482
SRR8316904Silver flowering stage19.317
SRR8316905Silver flowering stage9.998
SRR8316906Gold flowering stage 33.523
SRR8316907Gold flowering stage 36.343
SRR8316908Gold flowering stage 35.791
SRP132670SRR6706286Control31.335
SRR6706287Light intensity 50%29.496
SRR6706288Light intensity 20%28.259
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.984
CNS0095593Slightly white alabastrum(diploid) 231.944
CNS0095594Slightly white alabastrum(diploid) 331.648
CNS0095595Whole white alabastrum(diploid) 229.062
CNS0095596Whole white alabastrum(diploid) 325.700
CNS0095597Whole white alabastrum(diploid) 429.199
CNS0095598Silvery flower (diploied) 140.755
CNS0095599Silvery flower (diploied) 231.811
CNS0095600Silvery flower (diploied) 348.045
CNS0095601Golden flower (diploid) 129.647
CNS0095602Golden flower (diploid) 244.546
CNS0095603Golden flower (diploid) 344.055
CNS0095604Slightly white alabastrum(tetraploid) 124.012
CNS0095605Slightly white alabastrum(tetraploid) 222.736
CNS0095606Slightly white alabastrum(tetraploid) 332.362
CNS0095607Whole white alabastrum(tetraploid) 121.689
CNS0095608Whole white alabastrum(tetraploid) 217.637
CNS0095609Whole white alabastrum(tetraploid) 324.088
CNS0095610Silvery flower (tetraploid) 137.227
CNS0095611Silvery flower (tetraploid) 244.711
CNS0095612Silvery flower (tetraploid) 333.703
CNS0095613Golden flower (tetraploid) 128.825
CNS0095614Golden flower (tetraploid) 238.409
CNS0095615Golden flower (tetraploid) 332.583
CRA001975CRR073297Stem 135.987
CRR073298Stem 230.684
CRR073299Stem 338.332
CRR073300Leaf 135.164
CRR073301Leaf 232.106
CRR073302Leaf 324.235
CRR073303Juvenile bud 127.608
CRR073304Juvenile bud 227.321
CRR073305Juvenile bud 344.619
CRR073306Third green 115.761
CRR073307Third green 219.026
CRR073308Third green 317.724
CRR073309Second white 115.298
CRR073310Second white 27.563
CRR073311Second white 311.391
CRR073312Silver flowering 111.114
CRR073313Silver flowering 210.623
CRR073314Silver flowering 37.848
CRR073315Gold flowering 119.236
CRR073316Gold flowering 225.366
CRR073317Gold flowering 333.772
CRR073318Tawny withering 135.245
CRR073319Tawny withering 235.301
CRR073320Tawny withering 333.017