Gene detail

Detail information of GWHGAAZE009305

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007208354.1	hypothetical protein PRUPE_ppa001694mg [Prunus persica]
Swissprot	tr\|Q304B9\|NCASE_ARATH	Neutral ceramidase (Precursor)
trEMBL	tr\|M5WJZ2\|M5WJZ2_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ09553.1}
TAIR10	AT1G07380.1	Neutral/alkaline non-lysosomal ceramidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	107346172	107354454	+
GWHAAZE00000002	mRNA	107346172	107354454	+
GWHAAZE00000002	exon	107346172	107346536	+
GWHAAZE00000002	exon	107347012	107347220	+
GWHAAZE00000002	exon	107348369	107348713	+
GWHAAZE00000002	exon	107349702	107349966	+
GWHAAZE00000002	exon	107350503	107350773	+
GWHAAZE00000002	exon	107351269	107351394	+
GWHAAZE00000002	exon	107352089	107352152	+
GWHAAZE00000002	exon	107353139	107353308	+
GWHAAZE00000002	exon	107353906	107354454	+
GWHAAZE00000002	five_prime_UTR	107346172	107346195	+
GWHAAZE00000002	CDS	107346196	107346536	+
GWHAAZE00000002	CDS	107347012	107347220	+
GWHAAZE00000002	CDS	107348369	107348713	+
GWHAAZE00000002	CDS	107349702	107349966	+
GWHAAZE00000002	CDS	107350503	107350773	+
GWHAAZE00000002	CDS	107351269	107351394	+
GWHAAZE00000002	CDS	107352089	107352152	+
GWHAAZE00000002	CDS	107353139	107353308	+
GWHAAZE00000002	CDS	107353906	107354454	+

Transcript Sequence
>GWHTAAZE009315 ATTTGTCTATTGGTTGGAGTCAAGATGAAATTGTTTTCTCATCTCTACCTCAATTGCCGAAGACAACCAGCAGTTATTTGGGCTCTGGTTTCGCTGTTGCTCTTGGTGCACGATGGTAGGGTAATGGCAGCTTCAAATTACCTAGTCGGGCTGGGGAGCTATGACATCACAGGGCCTGCCGCTGATGTCAACATGATGGGGTACGCTAACACAGAGCAGATTGCTTCTGGTGTGCACTTTAGGTTGCGAGCCCGTGCTTTTATAGTGGCAGAGCCACAGGGGAATCGTGTAGTATTTGTAAATCTCGATGCCTGCATGGCCTCGCAACTTGTGACAATCAAAGTTCTTGAGAGGTTGAAGGCAAGGTATGGGAATCTCTATACGGAAAAGAATGTTGCTATTAGTGGTATTCACACCCATGCTGGCCCTGGTGGGTATCTCCAATATGTCGTGTACATTGTTACATCTTTGGGATTCGTGCGTCAGTCATTTGATGTTATTGTTAATGGCATCGAGCAAAGCATCATGCAAGCACATGAAAACCTCCGGCCTGGTTCAGTTTTCATGAATAAAGGGGAGCTGCTAGATGCTGGTGTAAACCGCAGTCCCAGTGCTTATCTCAATAACACTGCAGCAGAACGCAATAAATACAAGTATGATGTTGATAAAGAAATGACCCTTCTGAAGTTCGTAGACGATGAATGGGGCCCGGTGGGTAGCTTTAACTGGTTTGCAACACATGGAACTTCTATGAGCCGCACAAACTCATTGATAAGCGGGGATAACAAAGGAGCTGCTGCCCGATTCATGGAAGACTGGTTTGATAAGAATGGTGGTCGGATCACATATTCTGATGAATCTGAAGCTAGTGAAACCTCTCGAAGAGTCTCAAACATAATTCCTGCTGTCAACGATAATCACCACGAGTTAATGGAGCTTGCTGGCTCTTTCCGGTCTTCTTCTGGTAAACGAGCAACCAGGTATTCAAGTGTTGCCAAACGTGTGAGGAGTGCTCTCAGGCTGGCTGATAGACCTAAATTTGTATCTGCATTTTGTCAATCCAACTGCGGCGATGTTAGTCCAAATGTGCTCGGTGCATTCTGCACGGATACTGGGCTACCTTGTGACTTCAATCATAGTACTTGCGGTGGGAAGAATGAGTTATGCTATGGCCGAGGACCAGGTTACCCAGATGAATTTGAAAGTACGCGTATTATTGGGGACAGACAATTCAAAAAAGCTTCAGATCTTTTCAACACAGCATCAGAGAAGTTGACCGGGAAAATTGACTCTCGTCATGCTTATTTGGACTTCTCCAAGCTTGAGGTGACACTTCCTAAACAGGGAGGGGGCAGTGAAGTAGTTAAAACATGTCCTGCTGCAATGGGGTTTGCATTTGCTGCTGGTACAACTGATGGACCCGGAGCTTTTGATTTCAAGCAAGGAGATAACAAGGGGAATGCGTTCTGGAGATTGGTGCGCAACTTGCTTAAAACACCAGGGAAAGAGCAAGTTGCATGTCAGTATCCAAAGCCTATCTTGCTCGATACTGGTGAGATGAATAAGCCATATGATTGGGCGCCATCAATACTTCCAATCCAGATCCTAAGGATTGGGCAGATGGTCATTCTCAGTGTACCTGGAGAATTCACAACAATGGCTGGCAGACGCCTCCGCGATGCTGTAAAAATGGTGCTCACAAGTGGAAGCAACGGAGAATTCAACGGAAATGTCCATGTTGTGATAGCGGGGTTGACTAACACATATTCCCAATACGTAACTACCTTTGAGGAGTACCAGGTGCAGAGATATGAGGGCGCCTCCACTCTTTTCGGGCCACATACACTCACTGCCTACATTCAGGAGTTCAAGAAGCTAGCCACAGCTCTCATCAGCGGTAAACCTGTCGAACCGGGGCCACAACCTCCGGACCTACTAGACAAGCAAATAAGCCTTCTGACCCCAGTAGTGGTAGACTTGACCCCACCTGGAGTAAATTTTGGCGATATCAGCACCGACGTGCCTAAAAACGCCACATTCAAGAAGGGGGAAATGGCAAGTGTAGTTTTCTGGTCAGCCTGCCCGAGGAATGACCTCATGACGGAAGGCACATTTGCCTTGGTGGAGGTTTTAAATGGAAAGAATGCATGGGCCCCGGTTTATGACGATGATGATTTTTGCCTTCGGTTCAAGTGGTCAAGACCGGCTAAGCTCAGCGCTCGAAGTACGGCAACTATAGAGTGGAGAATCCCGGAGGATGCTGCTAGAGGGGTGTATAGAATCAGGCATTTTGGTGCTTCAAAGGGTCTTTTGGGTTCAATTCACCATTTTACTGGGTCTTCTAGTGCTTTTGTGGTGGCGTAA

Network for GWHGAAZE009305

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04734.14	Ceramidase_alk	39	613	6.90E-237
PF17048.6	Ceramidse_alk_C	615	778	3.00E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12349	ASAH2	Metabolic pathways	map01100
		Sphingolipid metabolism	map00600
		Sphingolipid signaling pathway	map04071

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	64.756
	SRR3591706	second leaf	35.948
	SRR3591707	mature leaf	22.770
	SRR3591708	Shoot apex	43.105
	SRR3591709	Stem	98.418
	SRR3591710	White floral bud	54.989
	SRR3591711	White flower	56.746
	SRR3591712	Green floral bud	58.228
	SRR3591713	Yellow flower	42.860
SRP173429	SRR8316895	Juvenile bud stage	49.337
	SRR8316896	Juvenile bud stage	61.121
	SRR8316897	Juvenile bud stage	22.062
	SRR8316894	Third green stage	24.778
	SRR8316900	Third green stage	64.101
	SRR8316901	Third green stage	64.699
	SRR8316898	Complete white stage	26.521
	SRR8316899	Complete white stage	65.898
	SRR8316903	Complete white stage	38.665
	SRR8316902	Silver flowering stage	24.630
	SRR8316904	Silver flowering stage	36.572
	SRR8316905	Silver flowering stage	16.584
	SRR8316906	Gold flowering stage	70.065
	SRR8316907	Gold flowering stage	64.088
	SRR8316908	Gold flowering stage	76.222
SRP132670	SRR6706286	Control	82.909
	SRR6706287	Light intensity 50%	80.924
	SRR6706288	Light intensity 20%	83.965
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	61.566
	CNS0095593	Slightly white alabastrum(diploid) 2	66.948
	CNS0095594	Slightly white alabastrum(diploid) 3	60.822
	CNS0095595	Whole white alabastrum(diploid) 2	48.772
	CNS0095596	Whole white alabastrum(diploid) 3	58.156
	CNS0095597	Whole white alabastrum(diploid) 4	46.433
	CNS0095598	Silvery flower (diploied) 1	46.358
	CNS0095599	Silvery flower (diploied) 2	44.624
	CNS0095600	Silvery flower (diploied) 3	89.850
	CNS0095601	Golden flower (diploid) 1	37.461
	CNS0095602	Golden flower (diploid) 2	77.213
	CNS0095603	Golden flower (diploid) 3	75.608
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.600
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.889
	CNS0095606	Slightly white alabastrum(tetraploid) 3	107.521
	CNS0095607	Whole white alabastrum(tetraploid) 1	45.868
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.695
	CNS0095609	Whole white alabastrum(tetraploid) 3	67.443
	CNS0095610	Silvery flower (tetraploid) 1	80.322
	CNS0095611	Silvery flower (tetraploid) 2	93.244
	CNS0095612	Silvery flower (tetraploid) 3	77.389
	CNS0095613	Golden flower (tetraploid) 1	37.989
	CNS0095614	Golden flower (tetraploid) 2	70.649
	CNS0095615	Golden flower (tetraploid) 3	58.394
CRA001975	CRR073297	Stem 1	92.001
	CRR073298	Stem 2	86.771
	CRR073299	Stem 3	112.651
	CRR073300	Leaf 1	85.193
	CRR073301	Leaf 2	84.063
	CRR073302	Leaf 3	94.923
	CRR073303	Juvenile bud 1	82.515
	CRR073304	Juvenile bud 2	74.919
	CRR073305	Juvenile bud 3	103.625
	CRR073306	Third green 1	55.333
	CRR073307	Third green 2	48.642
	CRR073308	Third green 3	54.341
	CRR073309	Second white 1	67.771
	CRR073310	Second white 2	49.689
	CRR073311	Second white 3	45.587
	CRR073312	Silver flowering 1	47.243
	CRR073313	Silver flowering 2	51.089
	CRR073314	Silver flowering 3	49.983
	CRR073315	Gold flowering 1	40.985
	CRR073316	Gold flowering 2	52.016
	CRR073317	Gold flowering 3	43.491
	CRR073318	Tawny withering 1	73.215
	CRR073319	Tawny withering 2	51.495
	CRR073320	Tawny withering 3	70.467