Gene detail

Detail information of GWHGAAZE009249

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283598.1	0	PREDICTED: probable receptor-like protein kinase At5g47070 [Vitis vinifera]
Swissprot	tr\|Q9LTC0\|Y5707_ARATH	5E-109	Probable receptor-like protein kinase At5g47070
trEMBL	tr\|F6GV07\|F6GV07_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43566.1}
TAIR10	AT2G28940.2	9E-136	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	106326819	106331847	-
GWHAAZE00000002	mRNA	106326819	106331847	-
GWHAAZE00000002	exon	106326819	106327354	-
GWHAAZE00000002	exon	106328334	106328514	-
GWHAAZE00000002	exon	106330090	106330350	-
GWHAAZE00000002	exon	106331536	106331847	-
GWHAAZE00000002	CDS	106331536	106331847	-
GWHAAZE00000002	CDS	106330090	106330350	-
GWHAAZE00000002	CDS	106328334	106328514	-
GWHAAZE00000002	CDS	106326819	106327354	-

Transcript Sequence
>GWHTAAZE009259 ATGAAGTGCTTCCATTTCACCAACGGAGATATCAAAGAGGAGGGGGACGAAAACGACGTCATTTCCAGGTCATCGAAGGTATCGTGGGCTCGTTCAAGGAGTGTGGCATCGAGTAGTGCCGATACTCGGAGGTCCGAGTTTGAGTCGGATTCGAGGGATTTGAGTGATTCGTTTGGGTTCTATGAGTTTTTGAGTCAACGTAGGGCTAATGATCTTAGGGTTTTTACTTTTGCGGAGCTGAAATCGGCAACCAGGGGGTTTAATCGAGCTTTGATGATTGGGGAGGGAGGGTTTGGGAGCGTTTACAGAGGAGGGCACAAGGAGTGGATTAATGAAGTGAGTTTTCTGGGTGTAGTCAAGCATCCAAATCTTGTAAAGTTAGTGGGATATTGTGCGGAAGATGATGAAAGAGGGATTCAACGGCTTTTGGTGTACGAGCTTATGCACAATAAAAGCTTGGAGGACCATTTATTATCTCGCATACAATCTCCTATCCCATGGATTACAAGATTAAAAATTGCTCAGGATGCAGCTCGGGGTTTGGCTTACTTGCATGAGGAAATGGATTTTCAGCTAATATTTAGAGATTTCAAAACTTCAAATATCCTTCTAGATGAAGACTTTAATGCAAAGCTCTCAGACTTTGGACTGGCTAGACAGGGTCCACCTGCTGGGCTAAGTCATGTTTCAACAGCGGTAAGCTCTATCTCGTTTTATTTATTCTATCTTCTACTTTTTGGTGGGCTCACAGCCTTAGGTTATGCAGCCCCCGAATATGTTCAAACCGGCAGATTAACTGCCAAAAGCGACGTGTGGAGCTTCGGTGTAGTTGTATACGAGCTAATCACCGGGAGGCGAGCAGTGGAGCGAAACTTGCCTCGAAGCGAACAAAAGCTCTTAGACTGGGTTAGACCCTACATAGCAGATTCAAAGAAATTCCACCTTATAATCGACTCTCGACTAGAAGATCAGTACTGCATCAAATCAGCTCAAAAACTTGCATCATTAGCCAACAAATGCCTAATGAAACAGCCCAAATCCCGCCCTAAAATGAGCGAGGTTGTTGAGATCCTTGGGAATATCATAAAGGAAACATCAACACAAGAGGAAAGTGAAGAAACCGAAGAGGTGAAAGAAGAACCTGTGGAGGAAATCGAATTACCGGGCAAACAGGGGAATAATTGTAATAAAAAGGGTTTCGATTTTAAAGAAATGGTCAGTTTTACAAACAAGTCGATCGGGAAACTGGATTGGAGAAATTGGACGCCCGCAGTAGTTAGAACGTGGTGA

Network for GWHGAAZE009249

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	107	356	9.90E-35

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.077
	SRR3591706	second leaf	18.205
	SRR3591707	mature leaf	21.981
	SRR3591708	Shoot apex	32.526
	SRR3591709	Stem	30.617
	SRR3591710	White floral bud	23.029
	SRR3591711	White flower	28.888
	SRR3591712	Green floral bud	20.902
	SRR3591713	Yellow flower	28.522
SRP173429	SRR8316895	Juvenile bud stage	15.304
	SRR8316896	Juvenile bud stage	19.901
	SRR8316897	Juvenile bud stage	9.543
	SRR8316894	Third green stage	8.148
	SRR8316900	Third green stage	22.105
	SRR8316901	Third green stage	20.092
	SRR8316898	Complete white stage	12.704
	SRR8316899	Complete white stage	34.794
	SRR8316903	Complete white stage	19.651
	SRR8316902	Silver flowering stage	14.533
	SRR8316904	Silver flowering stage	20.727
	SRR8316905	Silver flowering stage	8.998
	SRR8316906	Gold flowering stage	40.807
	SRR8316907	Gold flowering stage	32.793
	SRR8316908	Gold flowering stage	35.029
SRP132670	SRR6706286	Control	21.964
	SRR6706287	Light intensity 50%	23.416
	SRR6706288	Light intensity 20%	22.538
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.882
	CNS0095593	Slightly white alabastrum(diploid) 2	16.519
	CNS0095594	Slightly white alabastrum(diploid) 3	17.119
	CNS0095595	Whole white alabastrum(diploid) 2	13.888
	CNS0095596	Whole white alabastrum(diploid) 3	11.323
	CNS0095597	Whole white alabastrum(diploid) 4	14.451
	CNS0095598	Silvery flower (diploied) 1	23.411
	CNS0095599	Silvery flower (diploied) 2	18.369
	CNS0095600	Silvery flower (diploied) 3	21.602
	CNS0095601	Golden flower (diploid) 1	20.940
	CNS0095602	Golden flower (diploid) 2	21.732
	CNS0095603	Golden flower (diploid) 3	22.949
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.448
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.675
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.917
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.206
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.553
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.008
	CNS0095610	Silvery flower (tetraploid) 1	29.055
	CNS0095611	Silvery flower (tetraploid) 2	20.184
	CNS0095612	Silvery flower (tetraploid) 3	24.100
	CNS0095613	Golden flower (tetraploid) 1	18.356
	CNS0095614	Golden flower (tetraploid) 2	25.776
	CNS0095615	Golden flower (tetraploid) 3	21.129
CRA001975	CRR073297	Stem 1	18.019
	CRR073298	Stem 2	15.455
	CRR073299	Stem 3	10.345
	CRR073300	Leaf 1	17.668
	CRR073301	Leaf 2	18.480
	CRR073302	Leaf 3	10.534
	CRR073303	Juvenile bud 1	12.099
	CRR073304	Juvenile bud 2	10.665
	CRR073305	Juvenile bud 3	10.458
	CRR073306	Third green 1	13.789
	CRR073307	Third green 2	10.549
	CRR073308	Third green 3	11.708
	CRR073309	Second white 1	6.991
	CRR073310	Second white 2	11.483
	CRR073311	Second white 3	8.665
	CRR073312	Silver flowering 1	5.545
	CRR073313	Silver flowering 2	5.460
	CRR073314	Silver flowering 3	8.288
	CRR073315	Gold flowering 1	12.155
	CRR073316	Gold flowering 2	19.496
	CRR073317	Gold flowering 3	5.905
	CRR073318	Tawny withering 1	17.712
	CRR073319	Tawny withering 2	16.548
	CRR073320	Tawny withering 3	16.008