Detail information of GWHGAAZE009227


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006424799.10hypothetical protein CICLE_v10027981mg [Citrus clementina]
Swissprottr|Q9LHA8|MD37C_ARATH0Probable mediator of RNA polymerase II transcription subunit 37c
trEMBLtr|V4UFD6|V4UFD6_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR38039.1}
TAIR10AT3G12580.10heat shock protein 70

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene105840749105842323+
GWHAAZE00000002mRNA105840749105842323+
GWHAAZE00000002exon105840749105842323+
GWHAAZE00000002CDS105840749105842323+
Transcript Sequence

Network for GWHGAAZE009227

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00012.21HSP7014932.00E-206
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03283HSPA1s Spliceosome map03040
Protein processing in endoplasmic reticulummap04141
MAPK signaling pathwaymap04010
Endocytosismap04144
Antigen processing and presentationmap04612
Estrogen signaling pathwaymap04915
Longevity regulating pathway - multiple speciesmap04213

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.713
SRR3591706second leaf1.552
SRR3591707mature leaf4.713
SRR3591708Shoot apex5.633
SRR3591709Stem15.363
SRR3591710White floral bud7.974
SRR3591711White flower26.067
SRR3591712Green floral bud5.345
SRR3591713Yellow flower5.745
SRP173429 SRR8316895Juvenile bud stage 244.774
SRR8316896Juvenile bud stage 515.846
SRR8316897Juvenile bud stage 256.795
SRR8316894Third green stage 10.990
SRR8316900Third green stage 18.893
SRR8316901Third green stage 75.416
SRR8316898Complete white stage 9.027
SRR8316899Complete white stage 18.689
SRR8316903Complete white stage 15.644
SRR8316902Silver flowering stage50.140
SRR8316904Silver flowering stage28.131
SRR8316905Silver flowering stage26.326
SRR8316906Gold flowering stage 102.511
SRR8316907Gold flowering stage 78.668
SRR8316908Gold flowering stage 49.634
SRP132670SRR6706286Control12.015
SRR6706287Light intensity 50%8.895
SRR6706288Light intensity 20%6.974
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.928
CNS0095593Slightly white alabastrum(diploid) 228.514
CNS0095594Slightly white alabastrum(diploid) 328.791
CNS0095595Whole white alabastrum(diploid) 220.296
CNS0095596Whole white alabastrum(diploid) 33.897
CNS0095597Whole white alabastrum(diploid) 48.365
CNS0095598Silvery flower (diploied) 113.139
CNS0095599Silvery flower (diploied) 2479.538
CNS0095600Silvery flower (diploied) 3261.685
CNS0095601Golden flower (diploid) 1624.167
CNS0095602Golden flower (diploid) 2288.097
CNS0095603Golden flower (diploid) 3286.638
CNS0095604Slightly white alabastrum(tetraploid) 15.843
CNS0095605Slightly white alabastrum(tetraploid) 26.019
CNS0095606Slightly white alabastrum(tetraploid) 37.522
CNS0095607Whole white alabastrum(tetraploid) 13.420
CNS0095608Whole white alabastrum(tetraploid) 22.942
CNS0095609Whole white alabastrum(tetraploid) 36.623
CNS0095610Silvery flower (tetraploid) 113.555
CNS0095611Silvery flower (tetraploid) 229.751
CNS0095612Silvery flower (tetraploid) 389.810
CNS0095613Golden flower (tetraploid) 129.429
CNS0095614Golden flower (tetraploid) 213.358
CNS0095615Golden flower (tetraploid) 32.828
CRA001975CRR073297Stem 17.633
CRR073298Stem 29.139
CRR073299Stem 36.436
CRR073300Leaf 121.904
CRR073301Leaf 230.831
CRR073302Leaf 37.600
CRR073303Juvenile bud 111.840
CRR073304Juvenile bud 214.051
CRR073305Juvenile bud 325.789
CRR073306Third green 1103.298
CRR073307Third green 262.029
CRR073308Third green 358.192
CRR073309Second white 165.748
CRR073310Second white 298.617
CRR073311Second white 383.756
CRR073312Silver flowering 198.428
CRR073313Silver flowering 2119.183
CRR073314Silver flowering 3121.840
CRR073315Gold flowering 12.587
CRR073316Gold flowering 28.953
CRR073317Gold flowering 35.716
CRR073318Tawny withering 19.205
CRR073319Tawny withering 227.135
CRR073320Tawny withering 35.022