Gene detail

Detail information of GWHGAAZE009202

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010253317.1	PREDICTED: ABC transporter B family member 20 [Nelumbo nucifera]
Swissprot	tr\|Q8LPT1\|AB6B_ARATH	ABC transporter B family member 6
trEMBL	tr\|M0SFI8\|M0SFI8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P17720_001}
TAIR10	AT2G39480.1	P-glycoprotein 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	105204064	105219801	+
GWHAAZE00000002	mRNA	105204064	105219801	+
GWHAAZE00000002	exon	105204064	105204447	+
GWHAAZE00000002	exon	105206228	105206282	+
GWHAAZE00000002	exon	105206576	105206751	+
GWHAAZE00000002	exon	105207355	105207576	+
GWHAAZE00000002	exon	105208223	105208482	+
GWHAAZE00000002	exon	105208860	105209170	+
GWHAAZE00000002	exon	105209517	105209740	+
GWHAAZE00000002	exon	105215280	105215620	+
GWHAAZE00000002	exon	105216648	105217114	+
GWHAAZE00000002	exon	105217644	105217885	+
GWHAAZE00000002	exon	105218554	105219801	+
GWHAAZE00000002	CDS	105204064	105204447	+
GWHAAZE00000002	CDS	105206228	105206282	+
GWHAAZE00000002	CDS	105206576	105206751	+
GWHAAZE00000002	CDS	105207355	105207576	+
GWHAAZE00000002	CDS	105208223	105208482	+
GWHAAZE00000002	CDS	105208860	105209170	+
GWHAAZE00000002	CDS	105209517	105209740	+
GWHAAZE00000002	CDS	105215280	105215620	+
GWHAAZE00000002	CDS	105216648	105217114	+
GWHAAZE00000002	CDS	105217644	105217885	+
GWHAAZE00000002	CDS	105218554	105219801	+

Transcript Sequence
>GWHTAAZE009212 ATGTCCTCTAGAGGCGGCGGCGGCCTCTTCGGGTGGTCACCACCCCACATGCAGCCGTTGACGCCTGTCTCCGAAGTCTCGGAGCCGCCGGAGACTCCCTACCCCGAGCTGGATCCCAACTCCGAAGTACCGGCGCCGGAATTCCAATCCGAAGAGGTCGGTGAGGTGGAGGAGGCGGAGGCGCCGCCGGATTCTGTTCCGTTTTGGGGACTTTTCGCCTCCGCTGATGGATTCGATTGGATTTTGATGAGTTTGGGGGCGATGGCTGCTGCGGCGCACGGGGCAGCGCCGGTGGTGTATCTGCATCTGTTTGGGAATCTAATTCAGCTGCTAGTAGTTCATGGTTCAGAGAGATCAGATGAATTGTTTCAAAAGTTAAATCAGCATACTCTGTACATACTTTATATAGCTGCGGGTGTTTTTGCTGCAGGTTGGATTGAGGTTTCATGCTGGATTCTTACTGGTGAAAGACAGACCGCAGTCATTAGGTCAAAGTATGTTAAGGTCTTACTTAACCAGGACATGAGTTTTTTCGACACATATGGGAACAATGGGGACATTGTCAGCCAAGTCTTAAGTGATGTGCTACTTATTCAGTCTGCTCTTAGTGAAAAGAACAAACTTTTTTGTCATCAGGTTGGAAATTATATTCACAACATGGCAACGTTTTTCTGCGGACTTGTTTTTGGATTTGTCAACTGTTGGCAGATTGCACTCATAACGTTTGCCACTGGTCCGTTCATTGTTGCTGCTGGGGGGATATCAAACATTTTTCTGCACAAGCTTGCAGAAAACATTCAAGATGCATATGCTGAGTCTGCAAGCATTGCTGAGCAGGCTGTGTCTAACAGTAGAACATTATATGCATTTGCAAATGAAACGTTGGCGAAGTATTCATATGCTACTTCACTACAAGCAACACTGAGATACGGTATATTAATTAGCCTTGTGCAGGGACTTGGTCTTGGATTCACATATGGACTTGCAATATGTTCGTGTGCTTTACAACTTTGGGTTGGAGGGTTCCTGATTACACGTGGGAAATCAAGTGGCGGTGAAATTATCGCAGCTCTTTTCGCTATGATTCTATGTGGCCTCGGGCTTAATCAGGCAGCCACAAACTTCTATTCATTCGAGCAAGGAAGAATTGCTGCCTTTAGACTTTATGCTATGATAAGGCGTTCAAGCTCCATTGTCGATGATGATGGAAATACCTTAGTTTCTGTACAAGGAGTTATTGAGTTCCGTAATGTTTATTTCAGCTACCCCTCCCGTACTGAAATACCTGTATTAAGTGGGTTTTACCTTACTATACCTGCTAAAAAATGTGTAGCACTTGTTGGAAGGAATGGATCAGGAAAAAGTAGTATAATTCCGCTCATCGAACGATATTATGATCCTACTTTAGGAGAAGTTCTTTTGGATGGAGAAAATATTAAAAGCCTGAACCTAGAGTGGTTAAGAAATCAAATTGGACTTGTGACTCATGAACCTGCCTTGCTAAGTTTGAGTATAAGAGATAACATTGCTTATGGACGGTTAAATGCCACTGCTGATCAGATTGAAGAAGTTGCTAAAGTAGCACATCTACATGCATTTATAAGCTCTCTTGAAAAAGGGTATGAGACGGAGGTGGGTAGATCTGGTTTGGCTTTGACTGAAGAACAGAAAGTAAAGCTCTCTATTGCTAGGGCAGTGCTATCAAACCCTTCCATTCTCTTGCTGGATGAAGTTACTGGTAACCTCAATTTTGAAGAAGAAAGGGCTGTTATGGATGCTTTAGATATTATTGTATTGGGACGGTCAACTATAATGGTAGCTCGGAAGCTAAGCCTTGTGAAAAATGCTGATTATATTGCGGTAATGGAGGAGGGTCTACTTGTTGAAGGGGGTACACATGATGAACTGTTGAGCTCGGATGGTCTATATGCAGAGCTTCTCCGTTATGAAGATGCGGTAAAACTTCCTGAAAGGATGCCAAGCAGGAAAAAGAGTGAGACAACTTTCCAAACTGAAAATGATTTGCCACTTGATTCAAGAAATGGGCATTTGCATGCAAAGACTTTCAGTCCTCCTGTTGATAAAGTCAAAGATGTGCCTATAAATGAGGAGGAAAACGTCTTAGAATTTCAGAGCCCTCCGTCATTTTGGAGGCTTGTGAAGCTCAGTTCTGCTGAGTGGCTTTATGCCCTATTAGGAAGCATTGGTGCTGCAATTTTTGGATCTTTTAACCCTCTTCTTGCTTATATGTTTGCACTGATAGTGACGACATATTATAGGGATCGTGACTCTAATCGCCTGCGTGAAGAAGTGAACAAATGGTGCTTGCTCATCACTTGCATGGGTATTGTAACATTAGTTGCCAATTTTTTGCAACACTTCTACTTTGGCATAATGGGTGAGAAAATGGTAGAGCGAGTTAGAAGAATGATGTTCTCAGCAATGTTGCGCAATGAAGTTGGATGGTTTGATGAAGAGGAGAATAGTGCTGACAACTTATCCATGCTATTGGCAAATGATGCCACGTTTGTGCGTGCTGCTTTTAGCAACCGTCTTTCTATTTTCATCCAAGATGGTGCAGCTGTTGTTGTTGCTGTACTTATTGGGATGTTACTGGAATGGAGATTGGCTTTTGTGGCTCTGGCAACTTTACCAATCCTTACTGTTTCTGCAATTGCCCAGAAAATGTGGCTTTCTGGGTTGTCAGGGGGAATACAAGAGCTACACAGGAAGGCATCTTTGGTCCTCGAGGACGCAGTTAAAAACATACACACAGTTGTTGCATTTTGTGCTGGAAAGGAGGTGATGCAACTCTACAGTTTACAACTGAGTAAAACATATAGCCAAAGCTTCCTCCAGGGAACAGCAATTGGTTTTGCCTTTGGATTTTCACAGTTCCTTCTGTTTGCCTGTAATGCTCTCCTTCTTTGGTACACTGCAATTTCAGTAAAAAATGACTACATTGATTTACGCACGGCTCTGAAGGAGTACATGGTATTTTCATTTGCAACCTTCGCACTTGTAGAACCATTCGGGCTTGCCCCTTACATACTTAAACGGCGAAAGTCTCTCACTTCAGTTTTTAAAATCATTGACCGAGTTCCCAAGATTGACCCAGATGACACCTCGGCACTGAAACCTTCTAATGTCTTTGGAAGCATCGAGTTCAAAAATGTTGATTTTTGTTACCCAACCTTTCGAGAAGTGATGGTATTGAACAATTTCAGCCTTAAGGTAAACGGTGGACAAACCCTTGCTGTTGTGGGAGTTTCTGGTTCTGGAAAGAGTACTATAATCTCTCTGATTGAGAGATTTTATGACCCTGTTTCTGGTCAAATTTTATTGGACGGAAGGGATCTTAAATCGTTCAATCTAAGATGGTTGAGGAACCAAATGGGTCTTGTTCAGCAAGAACCTGTAATCTTCTCTACAACCATTAGAGAGAACATAATATATGCTCGACATAATGCAACGGAGGCCGAGATTAAAGAGGCTGCCCGAATAGCAAATGCCCACCATTTCATATCCAGTTTGCCTCATGGTTATGATACTCATGTTGGCATGAGGGGAGTCGACTTGACCCCAGGACAAAAACAGAGGATTGTAATTGCCCGTGTTGTGCTAAAGAATGCTCCCATTTTGTTATTGGACGAGGCGAGCTATGCGATTGAATCCGAGTCGAGCCGGGTGGTGCAGGAGGCTCTTGAGACGCTTATTATGGGGAACAAAACAACCATTCTCATCGCACATAGAGCCGCAATGATGCGGCATGTTGACAATATCGTGGTGGTTAATGGTGGCCGAATTGTAGAACAAGGAACCCATGATTCTCTAGTAGCTACGAAGGGCTTGTATGTTAGGTTAATGCAGCCTCACTTTGCAAAGGGCCTACGGCATCACTGGCTAGGGCAGAATTTGAGAGGACCATAA

Network for GWHGAAZE009202

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	85	363	4.70E-45
PF00005.28	ABC_tran	434	579	1.00E-24
PF00664.24	ABC_membrane	735	999	1.40E-41
PF00005.28	ABC_tran	1072	1219	1.40E-30

Protein Sequence

>GWHPAAZE009207
MSSRGGGGLFGWSPPHMQPLTPVSEVSEPPETPYPELDPNSEVPAPEFQSEEVGEVEEAEAPPDSVPFWGLFASADGFDWILMSLGAMAAAAHGAAPVVYLHLFGNLIQLLVVHGSERSDELFQKLNQHTLYILYIAAGVFAAGWIEVSCWILTGERQTAVIRSKYVKVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKNKLFCHQVGNYIHNMATFFCGLVFGFVNCWQIALITFATGPFIVAAGGISNIFLHKLAENIQDAYAESASIAEQAVSNSRTLYAFANETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGGFLITRGKSSGGEIIAALFAMILCGLGLNQAATNFYSFEQGRIAAFRLYAMIRRSSSIVDDDGNTLVSVQGVIEFRNVYFSYPSRTEIPVLSGFYLTIPAKKCVALVGRNGSGKSSIIPLIERYYDPTLGEVLLDGENIKSLNLEWLRNQIGLVTHEPALLSLSIRDNIAYGRLNATADQIEEVAKVAHLHAFISSLEKGYETEVGRSGLALTEEQKVKLSIARAVLSNPSILLLDEVTGNLNFEEERAVMDALDIIVLGRSTIMVARKLSLVKNADYIAVMEEGLLVEGGTHDELLSSDGLYAELLRYEDAVKLPERMPSRKKSETTFQTENDLPLDSRNGHLHAKTFSPPVDKVKDVPINEEENVLEFQSPPSFWRLVKLSSAEWLYALLGSIGAAIFGSFNPLLAYMFALIVTTYYRDRDSNRLREEVNKWCLLITCMGIVTLVANFLQHFYFGIMGEKMVERVRRMMFSAMLRNEVGWFDEEENSADNLSMLLANDATFVRAAFSNRLSIFIQDGAAVVVAVLIGMLLEWRLAFVALATLPILTVSAIAQKMWLSGLSGGIQELHRKASLVLEDAVKNIHTVVAFCAGKEVMQLYSLQLSKTYSQSFLQGTAIGFAFGFSQFLLFACNALLLWYTAISVKNDYIDLRTALKEYMVFSFATFALVEPFGLAPYILKRRKSLTSVFKIIDRVPKIDPDDTSALKPSNVFGSIEFKNVDFCYPTFREVMVLNNFSLKVNGGQTLAVVGVSGSGKSTIISLIERFYDPVSGQILLDGRDLKSFNLRWLRNQMGLVQQEPVIFSTTIRENIIYARHNATEAEIKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIVIARVVLKNAPILLLDEASYAIESESSRVVQEALETLIMGNKTTILIAHRAAMMRHVDNIVVVNGGRIVEQGTHDSLVATKGLYVRLMQPHFAKGLRHHWLGQNLRGP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.741
	SRR3591706	second leaf	8.247
	SRR3591707	mature leaf	11.995
	SRR3591708	Shoot apex	7.519
	SRR3591709	Stem	16.044
	SRR3591710	White floral bud	13.154
	SRR3591711	White flower	17.568
	SRR3591712	Green floral bud	11.353
	SRR3591713	Yellow flower	15.840
SRP173429	SRR8316895	Juvenile bud stage	3.591
	SRR8316896	Juvenile bud stage	5.377
	SRR8316897	Juvenile bud stage	2.877
	SRR8316894	Third green stage	2.581
	SRR8316900	Third green stage	7.233
	SRR8316901	Third green stage	7.879
	SRR8316898	Complete white stage	3.042
	SRR8316899	Complete white stage	9.358
	SRR8316903	Complete white stage	6.444
	SRR8316902	Silver flowering stage	4.869
	SRR8316904	Silver flowering stage	7.828
	SRR8316905	Silver flowering stage	3.562
	SRR8316906	Gold flowering stage	12.584
	SRR8316907	Gold flowering stage	9.004
	SRR8316908	Gold flowering stage	13.572
SRP132670	SRR6706286	Control	5.772
	SRR6706287	Light intensity 50%	5.442
	SRR6706288	Light intensity 20%	6.702
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.496
	CNS0095593	Slightly white alabastrum(diploid) 2	3.841
	CNS0095594	Slightly white alabastrum(diploid) 3	3.223
	CNS0095595	Whole white alabastrum(diploid) 2	4.222
	CNS0095596	Whole white alabastrum(diploid) 3	3.424
	CNS0095597	Whole white alabastrum(diploid) 4	3.445
	CNS0095598	Silvery flower (diploied) 1	8.254
	CNS0095599	Silvery flower (diploied) 2	5.770
	CNS0095600	Silvery flower (diploied) 3	16.935
	CNS0095601	Golden flower (diploid) 1	7.104
	CNS0095602	Golden flower (diploid) 2	18.544
	CNS0095603	Golden flower (diploid) 3	17.769
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.029
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.260
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.089
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.448
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.110
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.994
	CNS0095610	Silvery flower (tetraploid) 1	19.319
	CNS0095611	Silvery flower (tetraploid) 2	22.416
	CNS0095612	Silvery flower (tetraploid) 3	14.201
	CNS0095613	Golden flower (tetraploid) 1	7.904
	CNS0095614	Golden flower (tetraploid) 2	18.880
	CNS0095615	Golden flower (tetraploid) 3	16.431
CRA001975	CRR073297	Stem 1	6.125
	CRR073298	Stem 2	5.106
	CRR073299	Stem 3	3.704
	CRR073300	Leaf 1	8.946
	CRR073301	Leaf 2	6.598
	CRR073302	Leaf 3	6.583
	CRR073303	Juvenile bud 1	7.439
	CRR073304	Juvenile bud 2	5.421
	CRR073305	Juvenile bud 3	9.262
	CRR073306	Third green 1	5.715
	CRR073307	Third green 2	3.376
	CRR073308	Third green 3	4.721
	CRR073309	Second white 1	2.388
	CRR073310	Second white 2	2.668
	CRR073311	Second white 3	1.882
	CRR073312	Silver flowering 1	2.248
	CRR073313	Silver flowering 2	2.111
	CRR073314	Silver flowering 3	2.758
	CRR073315	Gold flowering 1	3.314
	CRR073316	Gold flowering 2	5.988
	CRR073317	Gold flowering 3	4.334
	CRR073318	Tawny withering 1	8.931
	CRR073319	Tawny withering 2	7.691
	CRR073320	Tawny withering 3	9.824