Gene detail

Detail information of GWHGAAZE009189

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281919.1	0	PREDICTED: ornithine carbamoyltransferase, chloroplastic [Vitis vinifera]
Swissprot	tr\|Q43814\|OTC_PEA	0	Ornithine carbamoyltransferase, chloroplastic (Precursor)
trEMBL	tr\|E0CQF4\|E0CQF4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19723.3}
TAIR10	AT1G75330.1	5E-163	ornithine carbamoyltransferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	104812889	104817205	-
GWHAAZE00000002	mRNA	104812889	104817205	-
GWHAAZE00000002	exon	104812889	104813071	-
GWHAAZE00000002	exon	104814309	104814584	-
GWHAAZE00000002	exon	104814693	104814824	-
GWHAAZE00000002	exon	104816046	104816380	-
GWHAAZE00000002	exon	104816995	104817205	-
GWHAAZE00000002	CDS	104816995	104817205	-
GWHAAZE00000002	CDS	104816046	104816380	-
GWHAAZE00000002	CDS	104814693	104814824	-
GWHAAZE00000002	CDS	104814309	104814584	-
GWHAAZE00000002	CDS	104812889	104813071	-

Transcript Sequence
>GWHTAAZE009199 ATGGCCGCAATTTTGTCACACCCTTCTTCTGTTAGATCGTCCGATGCCTCAGCTCTCTCCTCTTCTTCCCTCTTTGGCCGAAATTTCCGGCAAGGTTTGCATTTCTCCAGCATTTCTCAGCCTTCTCGGACCAGTATTCCTGCTTCTGGACGGCGAATTTCTTGTCAGACCTCAGCGACTTCTTCGCCATCAGCTTCTGTTAATGGAAAAGCAAAAGCAGGACTCAAGGATTTTTTACACATTGATGATTTTGACAAAGCAACGATATTAAAGATTTTGGATAGAGCCAAGGACGTAAAGGCATTGCTTAAATCAGGTGAGAGGACATTCCTACCGTTTAAGGGGAAGACAATGGCAATGATATTCGCAAAGCCATCAATGAGGACACGGGTTTCATTTGAGACTGGATTTTTCTTGCTTGGTGGCCACGCCCTATATTTGGGACCAGATGATATCCAAATGGGGAAGCGTGAAGAAACCCGTGATGTGGCCCGCGTTCTTTCTCGCTATAATGATGTCATTATGGCTCGTCTTTTTGCTCATCAGGACCTTCTGGATCTCGCTAAATATGCAACTGTACCTGTAATCAATGGCCTGACCGACTATAACCATCCTTGTCAGATCATGGCAGATGCACTGACAATAATTGAGCACATTGGTCAATTGGAAGGAACCAAGGTTGTCTATGTTGGAGATGGAAACAACATTGTGCATTCTTGGCTTTTGTTGGCATCAGTTATTCCTTTTCATTTTATCTGTGCTTGCCCAAAAGGTTTTGAACCTGACGAGAAGACAGTTAAAAAGGCACAACAAGCTGGAGTCGGCAAAATTGAGATAACTAATGATCCAAAGGAAGCTGTTAAAGGAGCCGATGTAGTGTATTCGGATGTGTGGGCCAGCATGGGTCAGAAGGAAGAAGCTGCATATCGCCGCCAAGTGTTTCGTGGATTCCAGGTGGATGAAGAACTTATGAAAATAGCAGGACGAAACGCGTATTTTATGCATTGCTTACCGGCAGAAAGAGGGGTGGAGGTTACGGATGGTGTTATCGAAGCTCCAAACTCTATTGTCTTCCCTCAAGCTGAGAACCGAATGCATGCTCAGAATGCAATAATGCTTCATTCGCTTGGTTTATGA

Network for GWHGAAZE009189

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02729.22	OTCace_N	76	217	1.10E-46
PF00185.25	OTCace	223	373	3.10E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00611	OTC, argF, argI	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Arginine biosynthesis	map00220

Gene Ontology

GO term	Ontology	Name
GO:0006520	biological_process	cellular amino acid metabolic process
GO:0006591	biological_process	ornithine metabolic process
GO:0016597	molecular_function	amino acid binding
GO:0016743	molecular_function	carboxyl- or carbamoyltransferase activity
GO:0004585	molecular_function	ornithine carbamoyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.518
	SRR3591706	second leaf	14.145
	SRR3591707	mature leaf	15.657
	SRR3591708	Shoot apex	23.008
	SRR3591709	Stem	15.960
	SRR3591710	White floral bud	11.215
	SRR3591711	White flower	14.164
	SRR3591712	Green floral bud	27.279
	SRR3591713	Yellow flower	9.115
SRP173429	SRR8316895	Juvenile bud stage	36.900
	SRR8316896	Juvenile bud stage	44.464
	SRR8316897	Juvenile bud stage	35.603
	SRR8316894	Third green stage	19.365
	SRR8316900	Third green stage	57.507
	SRR8316901	Third green stage	47.856
	SRR8316898	Complete white stage	9.936
	SRR8316899	Complete white stage	55.304
	SRR8316903	Complete white stage	23.014
	SRR8316902	Silver flowering stage	6.088
	SRR8316904	Silver flowering stage	6.303
	SRR8316905	Silver flowering stage	2.417
	SRR8316906	Gold flowering stage	9.937
	SRR8316907	Gold flowering stage	15.319
	SRR8316908	Gold flowering stage	15.385
SRP132670	SRR6706286	Control	46.991
	SRR6706287	Light intensity 50%	45.428
	SRR6706288	Light intensity 20%	51.308
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.995
	CNS0095593	Slightly white alabastrum(diploid) 2	42.039
	CNS0095594	Slightly white alabastrum(diploid) 3	40.861
	CNS0095595	Whole white alabastrum(diploid) 2	33.658
	CNS0095596	Whole white alabastrum(diploid) 3	33.918
	CNS0095597	Whole white alabastrum(diploid) 4	27.472
	CNS0095598	Silvery flower (diploied) 1	41.777
	CNS0095599	Silvery flower (diploied) 2	37.376
	CNS0095600	Silvery flower (diploied) 3	34.484
	CNS0095601	Golden flower (diploid) 1	35.974
	CNS0095602	Golden flower (diploid) 2	34.612
	CNS0095603	Golden flower (diploid) 3	34.393
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.976
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.637
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.250
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.804
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.014
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.288
	CNS0095610	Silvery flower (tetraploid) 1	20.037
	CNS0095611	Silvery flower (tetraploid) 2	25.684
	CNS0095612	Silvery flower (tetraploid) 3	14.351
	CNS0095613	Golden flower (tetraploid) 1	7.633
	CNS0095614	Golden flower (tetraploid) 2	14.135
	CNS0095615	Golden flower (tetraploid) 3	3.365
CRA001975	CRR073297	Stem 1	50.841
	CRR073298	Stem 2	48.372
	CRR073299	Stem 3	63.282
	CRR073300	Leaf 1	53.738
	CRR073301	Leaf 2	49.735
	CRR073302	Leaf 3	57.398
	CRR073303	Juvenile bud 1	59.055
	CRR073304	Juvenile bud 2	43.493
	CRR073305	Juvenile bud 3	67.149
	CRR073306	Third green 1	4.796
	CRR073307	Third green 2	3.957
	CRR073308	Third green 3	4.201
	CRR073309	Second white 1	7.985
	CRR073310	Second white 2	5.174
	CRR073311	Second white 3	3.308
	CRR073312	Silver flowering 1	2.451
	CRR073313	Silver flowering 2	3.811
	CRR073314	Silver flowering 3	2.942
	CRR073315	Gold flowering 1	34.982
	CRR073316	Gold flowering 2	42.354
	CRR073317	Gold flowering 3	43.132
	CRR073318	Tawny withering 1	39.703
	CRR073319	Tawny withering 2	31.474
	CRR073320	Tawny withering 3	37.267