Gene detail

Detail information of GWHGAAZE009188

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008385197.1	0	PREDICTED: receptor-like protein kinase HERK 1 [Malus domestica]
Swissprot	tr\|Q9LX66\|HERK_ARATH	0	Receptor-like protein kinase HERK 1 (Precursor)
trEMBL	tr\|I1M4R1\|I1M4R1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G40640.1}
TAIR10	AT3G46290.1	2E-164	hercules receptor kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	104779097	104781605	-
GWHAAZE00000002	mRNA	104779097	104781605	-
GWHAAZE00000002	exon	104779097	104779529	-
GWHAAZE00000002	exon	104779939	104781605	-
GWHAAZE00000002	CDS	104779939	104781605	-
GWHAAZE00000002	CDS	104779097	104779529	-

Transcript Sequence
>GWHTAAZE009198 ATGATGATGGGTTGCAAGGTTTTTAAAATTTTCATATGGGTTTCAACCATATTTTATCGGGTATGCTTTACTTTTGGATTTGATCCGGTTGACAAGTACTTGATTAACTGTGGATCACCGACCAACACCACAATTGGGGATAGGGTTTTTATGGCTGATAACTTAGCTTCAAATTTCCTTTCAACCCCTAATAACATTTTAATCAATACCTCAGCAAATTCAATCCCATCGTCTGATTATTCAACCCTCTATCAAACAGCTAGGGTTTTTACCGAGACCTCTAGCTACACATTTTCAATCCAAGAGAGCGGGCGGCACTGGATCCGCCTTTATTTTTACCCATTTGTTCATGGAACTTACAATTTGAATTCCTCTAGTTTCTCTGTTTCTACTCAAAATCACGCGCTTATTAGCAATTTTGATCCAAAGACTGCTAATGTAACAGTGAAAGAATTTTCGATCAATGTGACATCTAGTACTCTAGTGATTACCTTCACCCCCTCCAACAACTCGCCTGCGTTCTTGAATGCCTTGGAAGTTGTGTCGGTCCCTGATTTTCTTATCACTGATGATGCCGCCTCTGTAAATCCGGCTGGGAGTTTCCAAGGCCTCTTCAGGCAGGGGCTTGAGACCATTGCTAGGGTGAATATGGGCGGGCCCACAGTCTCATTTAACAACGATACGCTGTGGCGCATGTGGGTCCCGGATCAAAGTTACCTAATGCAACCGAATCTTGCTGAATCCGTATCAAAGATCGCAGCCGTTAGATATCCTTCGGGGGGTGCCACCGTAGATATTGCCCCGGCTACTGTTTATGGTACCGCCACTAAAATGCGGTCTGAAGATGATCCCAATAGTAGCTTCAATGTGACGTGGGAATTTGTTGTGGATCCGGGGTTTCAATACCTTGTTCGGTTTCACTTTTGTGATATCGTGAGTATATCTTTGAATCAGCTCTACTTCAATGTCTACATTGATTCTTGGAAAGTTTTGTCAGATTTTGATTTGAGTTCAAGAAGCAACATTTTGGCCACTGCTGTTTATATGGATTTTGTCACATCATCATCGGATCGTAACAGGCTTCATGTTAGTATCGGTCCGTCTCCACTCAACAGTGGCTACCCCGATGCTATTTTGAACGGATTGGAGATTATGAAGATGAACAACTCTAAGGGTAGCCTTAGTGGGGTGGGGTCCGTGCCATCTTCCTCGAAAGCTGGGTCAAAGAAGAACGCCGGGCTGATAGTGGGTGTTTGTGTAGGGGTCTTTGTTGCGGCTTTGATGGTTGGATTTTTAATTTTGATAATAAGACGAAGAAGAGAAATGGAACGTCTTGGTCTTTTGAAAACGTGGACGCCTTTATCCATCGGAGGAACCTCCCACACTTTGGGAAGCAAGTACTCTAATGGAACAAATATCAGTATCGGCTCTAACTTTGGCTATCGGTTTTCTTTTGCTACGGTTCTAGAGGCAACGAATAACTTCGATGAGAGTTGGGTTATTGGGATTGGCGGCTTTGGGAAAGTTTACAAGGGTTCTTTTAACGATGGTACGAAAGTGGCCGTTAAAAGGGGTAATCCCAAGTCCCAACAAGGCCTAGCCGAGTTTCGCACAGAAATTGAGATGCTATCTCAATTCCGCCACCGCCATTTAGTTTCATTGATTGGGCCTGTGATAGATCCGTCTCTTCCTCGGGAAATGGTCAACCTAGCTGAATGGGCGATGAAGTGGCAAAAGAAGGGTCAGCTTGAGCAAATCATTGACCCAAATCTCACAGGGAAAATAAGACCCGATTCACTTAGAAAGTTCGCAGAAACGGCAGAGAAATGCTTGGCGGACTTTGGGGTGGACCGGCCCTCTATGGGTGATGTACTTTGGAATCTTGAATATGCCCTTCAACTTCAAGAAGCGGTTATTCACAATGATCCCGACGAAAACAGTACTAATGTCATTGGGGAGTTATCTCCACAAGTCAGTGACTTTAGTCGGGTTGATACTAATGAGCCTGGTGGTGAGCTAGAAATGTCGAGTGTGGATGATCTTTCGGGTGTTTCAATGAGCAAGGTTTTCTCTCAGCTGGTGAAATCTGAGGGTCGATAA

Network for GWHGAAZE009188

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	35	387	6.50E-40
PF07714.18	PK_Tyr_Ser-Thr	500	603	1.30E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.955
	SRR3591706	second leaf	3.936
	SRR3591707	mature leaf	9.250
	SRR3591708	Shoot apex	2.641
	SRR3591709	Stem	5.628
	SRR3591710	White floral bud	15.439
	SRR3591711	White flower	13.800
	SRR3591712	Green floral bud	8.439
	SRR3591713	Yellow flower	6.765
SRP173429	SRR8316895	Juvenile bud stage	2.674
	SRR8316896	Juvenile bud stage	3.542
	SRR8316897	Juvenile bud stage	1.076
	SRR8316894	Third green stage	2.064
	SRR8316900	Third green stage	4.539
	SRR8316901	Third green stage	4.853
	SRR8316898	Complete white stage	5.019
	SRR8316899	Complete white stage	8.762
	SRR8316903	Complete white stage	9.315
	SRR8316902	Silver flowering stage	5.996
	SRR8316904	Silver flowering stage	9.139
	SRR8316905	Silver flowering stage	3.802
	SRR8316906	Gold flowering stage	8.027
	SRR8316907	Gold flowering stage	8.139
	SRR8316908	Gold flowering stage	6.832
SRP132670	SRR6706286	Control	5.252
	SRR6706287	Light intensity 50%	5.246
	SRR6706288	Light intensity 20%	6.655
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.494
	CNS0095593	Slightly white alabastrum(diploid) 2	3.162
	CNS0095594	Slightly white alabastrum(diploid) 3	2.543
	CNS0095595	Whole white alabastrum(diploid) 2	2.414
	CNS0095596	Whole white alabastrum(diploid) 3	1.890
	CNS0095597	Whole white alabastrum(diploid) 4	2.999
	CNS0095598	Silvery flower (diploied) 1	5.716
	CNS0095599	Silvery flower (diploied) 2	4.123
	CNS0095600	Silvery flower (diploied) 3	13.048
	CNS0095601	Golden flower (diploid) 1	3.225
	CNS0095602	Golden flower (diploid) 2	7.996
	CNS0095603	Golden flower (diploid) 3	7.445
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.125
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.596
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.316
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.249
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.737
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.415
	CNS0095610	Silvery flower (tetraploid) 1	7.240
	CNS0095611	Silvery flower (tetraploid) 2	8.275
	CNS0095612	Silvery flower (tetraploid) 3	9.473
	CNS0095613	Golden flower (tetraploid) 1	3.128
	CNS0095614	Golden flower (tetraploid) 2	3.737
	CNS0095615	Golden flower (tetraploid) 3	4.628
CRA001975	CRR073297	Stem 1	4.624
	CRR073298	Stem 2	3.892
	CRR073299	Stem 3	3.803
	CRR073300	Leaf 1	5.977
	CRR073301	Leaf 2	6.436
	CRR073302	Leaf 3	4.050
	CRR073303	Juvenile bud 1	6.345
	CRR073304	Juvenile bud 2	6.720
	CRR073305	Juvenile bud 3	7.441
	CRR073306	Third green 1	8.812
	CRR073307	Third green 2	6.347
	CRR073308	Third green 3	7.237
	CRR073309	Second white 1	5.264
	CRR073310	Second white 2	5.721
	CRR073311	Second white 3	4.249
	CRR073312	Silver flowering 1	2.856
	CRR073313	Silver flowering 2	2.988
	CRR073314	Silver flowering 3	3.218
	CRR073315	Gold flowering 1	5.869
	CRR073316	Gold flowering 2	7.705
	CRR073317	Gold flowering 3	7.314
	CRR073318	Tawny withering 1	3.756
	CRR073319	Tawny withering 2	1.698
	CRR073320	Tawny withering 3	2.673