Gene detail

Detail information of GWHGAAZE009184

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008385197.1	0	PREDICTED: receptor-like protein kinase HERK 1 [Malus domestica]
Swissprot	tr\|Q9LX66\|HERK_ARATH	0	Receptor-like protein kinase HERK 1 (Precursor)
trEMBL	tr\|A0A061GXM4\|A0A061GXM4_THECC	0	Kinase {ECO:0000313\|EMBL:EOY34191.1}
TAIR10	AT3G46290.1	8E-161	hercules receptor kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	104636336	104638687	-
GWHAAZE00000002	mRNA	104636336	104638687	-
GWHAAZE00000002	exon	104637024	104638687	-
GWHAAZE00000002	exon	104636336	104636612	-
GWHAAZE00000002	CDS	104637024	104638687	-
GWHAAZE00000002	CDS	104636336	104636612	-

Transcript Sequence
>GWHTAAZE009194 ATGGTGATGGGTTGCAAGGTTTTTAAAATTTTCATATGGGTTTCAACCATATTTTATCGGGTATGCTTTACTTTTGGATTTGATCCGGTTGACAATTACTTGATTAACTGTGGATCACCGACCAACACCACAATTGGGGATAGGGTTTTTATGGCTGATAACTTAGCTTCAAATTTCCTTTCAACCCCTAATAACATTTTAATCAATACCTCAGCAAATTCAATCCCATCGTCCGATTATTCAACCCTCTATCAAACAGCTAGGGTTTTTACCGAGACCTCTAGCTACACATTTTCAATCCAAGAGAGGGGGCGGCACTGGATCCGCCTTTATTTTTACCCATTTGTTCATGGAACTTACAATTTGAATTCCTCTAGTTTCTCTGTTTCTACTCAAAATCACGTGCTTATTAGCAATTTTGATCCAAAGACTGCTAATGTAACAGTGAAAGAATTTTCGATCAATGTGACATCTAGTACTCTAGTGATTACCTTCACCCCCTCCAACAACTCGCCTGCGTTCTTGAATGCCTTGGAAGTTGTGTCGGTCCCTGATTTTCTTATCACTGATGATGCCGCCTCTGTAAATCCGGCTGGGAGTTTCCAAGGCCTCTTCAGGCAGGGGCTTGAGACCGTTGCTAGGGTGAATATGGGCGGGCCCACAGTCTCATTTAACAACGATACGCTGTGGCGCATGTGGGTCCCGGATCAAAGTTACCTAATGCAACGAATCTTGCTGAATCCGTATCAAAGATCGCAGCCGTTAGATATCCTTCGGGGTGCCACCGTAGATATTGCCCCGGCTACTGTTTATGGTACCGCCACTAAAATGCGGTCTGAAGATGATCCCAATAGTAGCTTCAATGTGACGTGGGAATTTGTTGTGGATCCGGGGTTTCAATACCTTGTTCGGTTTCACTTTTGTGATATCGTGAGTATATCTTTGAATCAGCTCTACTTCAATGTCTACATTGATTCTTGGAAAGTTTTGTCAGATTTTGATTTGAGTTCAAGAAGCAACATTTTGGCCACTGCGGTTTATGTGGATTTTGTCACATCATCATCGGATCGTAATAGGCTTCATGTTAGTATCGGTCCGTCTCCACTCAACAGTGGCTACCCCGATGCTATTTTGAACGGATTGGAGATTATGAAGATGAACAACTCTAAGGGTAGCCTTAGTGGGGTGGGGTCCGTGCCATCTTCCTCAAAAGCTGGGTCAAAGAAGAATGCCGGGCTGATAGTGGGTGTTTGTGTAGGGGTCTTTGTTGCGGCTTTGATGGTTGGATTTTTAATTTTGATAATAAGACGAAGAAGAGAAATGGAACGTCTTGGTCTTTTGAAAACGTGGACGCCTTTGTCCATCGGAGGAACCTCCCACACTATGGGAAGCAAGTACTCTAATGGAACAAATATCAGTATCGGCTCTAACTTTGGCTATCGGTTTTCTTTTGCTACGGTTCTAGAGGCAACGAATAACTTCGATGAGAGTTGGGTTATTGGGATTGGCGGCTTTGGGAAAGTTTACAAGGGTTCTTTTAACGATGGTACGAAAGTGGCCGTTAAAAGGGGTAATCCCAAGTCCCAACAAGGCCTAGCCGAGTTTCGCACAGAAATTGAGATGCTATCTCAATTCCGCCACCGCCATTTAGTTTCATTGATTGGGCCTGTGATAGATCCGTCTCTTCCTCGGGAAATGGTCAACCTAGCTGAATGGGCGATGAAGTGGCAAAAGAAGGGTCAGCTTGAGCAAATCATTGACCCAAATCTCACAGGGAAAATAAGACCCGATTCACTTAGAAAGTTCGCAGAAACAGCGGAGAAATGCTTGGCGGACTTTGGGGTGGACCGGCCCTCTATGGGTGATGTACTTTGGAATCTTGAATATGCCCTTCAACTTCAAGAAGCGGTTATTCACAATGATCAGCGAAAACAGTACTAA

Network for GWHGAAZE009184

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	35	386	2.10E-39
PF07714.18	PK_Tyr_Ser-Thr	499	602	1.10E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.026
	SRR3591706	second leaf	3.948
	SRR3591707	mature leaf	9.609
	SRR3591708	Shoot apex	2.820
	SRR3591709	Stem	5.313
	SRR3591710	White floral bud	15.031
	SRR3591711	White flower	13.898
	SRR3591712	Green floral bud	8.226
	SRR3591713	Yellow flower	7.322
SRP173429	SRR8316895	Juvenile bud stage	2.251
	SRR8316896	Juvenile bud stage	1.821
	SRR8316897	Juvenile bud stage	1.005
	SRR8316894	Third green stage	1.347
	SRR8316900	Third green stage	4.113
	SRR8316901	Third green stage	3.621
	SRR8316898	Complete white stage	4.243
	SRR8316899	Complete white stage	8.504
	SRR8316903	Complete white stage	7.383
	SRR8316902	Silver flowering stage	4.334
	SRR8316904	Silver flowering stage	6.652
	SRR8316905	Silver flowering stage	3.469
	SRR8316906	Gold flowering stage	6.958
	SRR8316907	Gold flowering stage	5.149
	SRR8316908	Gold flowering stage	7.362
SRP132670	SRR6706286	Control	5.196
	SRR6706287	Light intensity 50%	5.530
	SRR6706288	Light intensity 20%	5.470
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.624
	CNS0095593	Slightly white alabastrum(diploid) 2	1.372
	CNS0095594	Slightly white alabastrum(diploid) 3	1.122
	CNS0095595	Whole white alabastrum(diploid) 2	1.593
	CNS0095596	Whole white alabastrum(diploid) 3	1.565
	CNS0095597	Whole white alabastrum(diploid) 4	1.753
	CNS0095598	Silvery flower (diploied) 1	3.716
	CNS0095599	Silvery flower (diploied) 2	2.201
	CNS0095600	Silvery flower (diploied) 3	10.995
	CNS0095601	Golden flower (diploid) 1	1.950
	CNS0095602	Golden flower (diploid) 2	6.860
	CNS0095603	Golden flower (diploid) 3	4.859
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.333
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.346
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.551
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.148
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.313
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.938
	CNS0095610	Silvery flower (tetraploid) 1	8.874
	CNS0095611	Silvery flower (tetraploid) 2	9.220
	CNS0095612	Silvery flower (tetraploid) 3	9.946
	CNS0095613	Golden flower (tetraploid) 1	3.550
	CNS0095614	Golden flower (tetraploid) 2	6.122
	CNS0095615	Golden flower (tetraploid) 3	5.483
CRA001975	CRR073297	Stem 1	4.212
	CRR073298	Stem 2	3.901
	CRR073299	Stem 3	2.983
	CRR073300	Leaf 1	5.900
	CRR073301	Leaf 2	5.104
	CRR073302	Leaf 3	3.953
	CRR073303	Juvenile bud 1	6.329
	CRR073304	Juvenile bud 2	5.983
	CRR073305	Juvenile bud 3	6.149
	CRR073306	Third green 1	7.629
	CRR073307	Third green 2	5.404
	CRR073308	Third green 3	6.978
	CRR073309	Second white 1	4.842
	CRR073310	Second white 2	5.815
	CRR073311	Second white 3	4.286
	CRR073312	Silver flowering 1	3.517
	CRR073313	Silver flowering 2	2.705
	CRR073314	Silver flowering 3	1.687
	CRR073315	Gold flowering 1	4.767
	CRR073316	Gold flowering 2	7.320
	CRR073317	Gold flowering 3	5.286
	CRR073318	Tawny withering 1	3.361
	CRR073319	Tawny withering 2	1.441
	CRR073320	Tawny withering 3	2.946