Gene detail

Detail information of GWHGAAZE009182

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011005012.1	6.22076E-66	PREDICTED: uncharacterized protein LOC105111383 [Populus euphratica]
Swissprot	tr\|Q9FHH8\|COL5_ARATH	2E-10	Zinc finger protein CONSTANS-LIKE 5
trEMBL	tr\|A0A067LHT7\|A0A067LHT7_JATCU	2E-62	Uncharacterized protein {ECO:0000313\|EMBL:KDP44160.1}
TAIR10	AT5G59990.1	3E-29	CCT motif family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	104578634	104581776	+
GWHAAZE00000002	mRNA	104578634	104581776	+
GWHAAZE00000002	exon	104578634	104579072	+
GWHAAZE00000002	exon	104580274	104580444	+
GWHAAZE00000002	exon	104581549	104581776	+
GWHAAZE00000002	five_prime_UTR	104578634	104578679	+
GWHAAZE00000002	CDS	104578680	104579072	+
GWHAAZE00000002	CDS	104580274	104580444	+
GWHAAZE00000002	CDS	104581549	104581776	+

Transcript Sequence
>GWHTAAZE009192 CACATTATAATATTTTTTTTCATTTTACAAACAAAAACCACGCGCCATGTACGGACGCAACAACAATAATAAGGAATTCGCCTATGCCTACTCCTCGGCTGATTTCCTCGCCCATTTCGACGTTCCCTCTAATTTTCCATCAGCTCCGTTACCGCCTCCACCTATCATCATTCCCAGTAATGAATTTGAATCGGTAACGGCGGCAGTGAAGCTGGATTTTGGGTACGCGACTAGTAGCGGGTGTAGTAGTTACGGATCCCCGAGTTCACTCGCGAGTTATGGGACCCAAACCTCCGAATTGATGATGCAGAGGAGCGTGAGCAGCCATTCACTTCACAAGCACGTGAATGCGTTTCAGCAACTCGTTTCTTCACCCACTGAGTTCTTGGACTCGGATACTAGCCCCGTCAGGAAAGTTTTCAGCACCGGTGATTTGCAGCAAAATCAAGGGTTAGGAAGTCCACTGTCATCAAATAATAATAATGAGAGCAGCAGTAGCATCATTGAAGGTATGAGCAGAGCCTGTAGATACAGTCCAGACGAGAAAAAGGAAAGAATTGAAAGATACAGAACCAAGAGAAACCACCGCAATTTCAACAAGAAGATCAAGTATGAATGTAGGAAGACATTGGCAGACAGCAGGCCAAGAATAAGGGGAAGATTCGCAAGAAACGAAGAAACTGAAAAAGCACCTCAAATTAATACTGCTCATCAATGGAATAATCATGATGATGAGCAAGTGGGTGGGGATATTGAAGAATATCATGAGGAAGAACTAGATGATGATAATAATTGGGTCAATTTTCTCAATGCCTTCTCTGCAAATCTGATTCCTTAA

Network for GWHGAAZE009182

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06203.15	CCT	168	209	1.40E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.490
	SRR3591706	second leaf	9.611
	SRR3591707	mature leaf	1.637
	SRR3591708	Shoot apex	5.834
	SRR3591709	Stem	2.508
	SRR3591710	White floral bud	7.362
	SRR3591711	White flower	10.710
	SRR3591712	Green floral bud	0.697
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.820
	SRR8316896	Juvenile bud stage	0.753
	SRR8316897	Juvenile bud stage	1.185
	SRR8316894	Third green stage	0.149
	SRR8316900	Third green stage	0.005
	SRR8316901	Third green stage	0.078
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.503
	SRR8316903	Complete white stage	2.441
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.325
	SRR8316908	Gold flowering stage	0.060
SRP132670	SRR6706286	Control	0.517
	SRR6706287	Light intensity 50%	0.720
	SRR6706288	Light intensity 20%	0.470
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.168
	CNS0095593	Slightly white alabastrum(diploid) 2	0.537
	CNS0095594	Slightly white alabastrum(diploid) 3	0.410
	CNS0095595	Whole white alabastrum(diploid) 2	0.544
	CNS0095596	Whole white alabastrum(diploid) 3	0.266
	CNS0095597	Whole white alabastrum(diploid) 4	0.165
	CNS0095598	Silvery flower (diploied) 1	7.082
	CNS0095599	Silvery flower (diploied) 2	5.379
	CNS0095600	Silvery flower (diploied) 3	2.270
	CNS0095601	Golden flower (diploid) 1	6.767
	CNS0095602	Golden flower (diploid) 2	3.524
	CNS0095603	Golden flower (diploid) 3	3.990
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.381
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.353
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.091
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.308
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.065
	CNS0095610	Silvery flower (tetraploid) 1	0.358
	CNS0095611	Silvery flower (tetraploid) 2	1.518
	CNS0095612	Silvery flower (tetraploid) 3	1.082
	CNS0095613	Golden flower (tetraploid) 1	0.143
	CNS0095614	Golden flower (tetraploid) 2	0.485
	CNS0095615	Golden flower (tetraploid) 3	0.083
CRA001975	CRR073297	Stem 1	1.699
	CRR073298	Stem 2	0.256
	CRR073299	Stem 3	1.975
	CRR073300	Leaf 1	0.176
	CRR073301	Leaf 2	0.070
	CRR073302	Leaf 3	0.418
	CRR073303	Juvenile bud 1	0.087
	CRR073304	Juvenile bud 2	0.002
	CRR073305	Juvenile bud 3	0.648
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.157
	CRR073308	Third green 3	0.655
	CRR073309	Second white 1	0.066
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.078
	CRR073316	Gold flowering 2	1.242
	CRR073317	Gold flowering 3	1.723
	CRR073318	Tawny withering 1	1.025
	CRR073319	Tawny withering 2	1.189
	CRR073320	Tawny withering 3	1.190