Detail information of GWHGAAZE009180


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006364927.10PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 [Solanum tuberosum]
Swissprottr|Q9SWG3|FAR1_ARATH0Protein FAR-RED IMPAIRED RESPONSE 1
trEMBLtr|K4CKM9|K4CKM9_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g060840.1.1}
TAIR10AT4G15090.10FRS (FAR1 Related Sequences) transcription factor family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene104507847104511418-
GWHAAZE00000002mRNA104507847104511418-
GWHAAZE00000002exon104507847104507972-
GWHAAZE00000002exon104508051104508128-
GWHAAZE00000002exon104508225104508293-
GWHAAZE00000002exon104508380104508448-
GWHAAZE00000002exon104508587104508655-
GWHAAZE00000002exon104509061104509117-
GWHAAZE00000002exon104509304104511418-
GWHAAZE00000002CDS104509304104511418-
GWHAAZE00000002CDS104509061104509117-
GWHAAZE00000002CDS104508587104508655-
GWHAAZE00000002CDS104508380104508448-
GWHAAZE00000002CDS104508225104508293-
GWHAAZE00000002CDS104508051104508128-
GWHAAZE00000002CDS104507847104507972-
Transcript Sequence

Network for GWHGAAZE009180

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03101.16FAR1671534.30E-29
PF10551.10MULE2733661.60E-23
PF04434.18SWIM5535869.90E-07
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyFAR1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.121
SRR3591706second leaf6.105
SRR3591707mature leaf6.667
SRR3591708Shoot apex7.360
SRR3591709Stem7.169
SRR3591710White floral bud8.272
SRR3591711White flower10.751
SRR3591712Green floral bud9.463
SRR3591713Yellow flower6.193
SRP173429 SRR8316895Juvenile bud stage 8.510
SRR8316896Juvenile bud stage 12.197
SRR8316897Juvenile bud stage 5.443
SRR8316894Third green stage 7.280
SRR8316900Third green stage 16.319
SRR8316901Third green stage 14.991
SRR8316898Complete white stage 6.731
SRR8316899Complete white stage 22.042
SRR8316903Complete white stage 11.852
SRR8316902Silver flowering stage7.034
SRR8316904Silver flowering stage13.344
SRR8316905Silver flowering stage5.190
SRR8316906Gold flowering stage 16.563
SRR8316907Gold flowering stage 14.650
SRR8316908Gold flowering stage 12.974
SRP132670SRR6706286Control9.336
SRR6706287Light intensity 50%10.204
SRR6706288Light intensity 20%10.585
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.464
CNS0095593Slightly white alabastrum(diploid) 27.056
CNS0095594Slightly white alabastrum(diploid) 37.108
CNS0095595Whole white alabastrum(diploid) 26.293
CNS0095596Whole white alabastrum(diploid) 36.318
CNS0095597Whole white alabastrum(diploid) 46.538
CNS0095598Silvery flower (diploied) 19.669
CNS0095599Silvery flower (diploied) 27.306
CNS0095600Silvery flower (diploied) 313.278
CNS0095601Golden flower (diploid) 16.377
CNS0095602Golden flower (diploid) 212.860
CNS0095603Golden flower (diploid) 312.264
CNS0095604Slightly white alabastrum(tetraploid) 17.292
CNS0095605Slightly white alabastrum(tetraploid) 25.787
CNS0095606Slightly white alabastrum(tetraploid) 315.202
CNS0095607Whole white alabastrum(tetraploid) 14.935
CNS0095608Whole white alabastrum(tetraploid) 23.466
CNS0095609Whole white alabastrum(tetraploid) 310.981
CNS0095610Silvery flower (tetraploid) 112.206
CNS0095611Silvery flower (tetraploid) 210.315
CNS0095612Silvery flower (tetraploid) 39.759
CNS0095613Golden flower (tetraploid) 14.649
CNS0095614Golden flower (tetraploid) 27.931
CNS0095615Golden flower (tetraploid) 35.954
CRA001975CRR073297Stem 17.151
CRR073298Stem 27.821
CRR073299Stem 35.139
CRR073300Leaf 18.964
CRR073301Leaf 27.213
CRR073302Leaf 34.816
CRR073303Juvenile bud 15.601
CRR073304Juvenile bud 24.211
CRR073305Juvenile bud 34.784
CRR073306Third green 11.691
CRR073307Third green 22.097
CRR073308Third green 32.905
CRR073309Second white 12.191
CRR073310Second white 22.812
CRR073311Second white 32.803
CRR073312Silver flowering 11.420
CRR073313Silver flowering 21.185
CRR073314Silver flowering 31.485
CRR073315Gold flowering 13.096
CRR073316Gold flowering 26.424
CRR073317Gold flowering 31.883
CRR073318Tawny withering 14.488
CRR073319Tawny withering 25.623
CRR073320Tawny withering 33.494