Detail information of GWHGAAZE009171


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010651094.10PREDICTED: DNA repair protein RAD51 homolog 2 isoform X1 [Vitis vinifera]
Swissprottr|Q9SK02|RA51B_ARATH0DNA repair protein RAD51 homolog 2
trEMBLtr|D7SKR1|D7SKR1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI16239.3}
TAIR10AT2G28560.24E-147DNA repair (Rad51) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene104236130104241175-
GWHAAZE00000002mRNA104236130104241175-
GWHAAZE00000002exon104241093104241175-
GWHAAZE00000002exon104239558104239671-
GWHAAZE00000002exon104239261104239413-
GWHAAZE00000002exon104238856104238959-
GWHAAZE00000002exon104238686104238749-
GWHAAZE00000002exon104238278104238333-
GWHAAZE00000002exon104237907104237987-
GWHAAZE00000002exon104237655104237714-
GWHAAZE00000002exon104237461104237552-
GWHAAZE00000002exon104237030104237149-
GWHAAZE00000002exon104236686104236838-
GWHAAZE00000002exon104236130104236185-
GWHAAZE00000002five_prime_UTR104241153104241175-
GWHAAZE00000002CDS104241093104241152-
GWHAAZE00000002CDS104239558104239671-
GWHAAZE00000002CDS104239261104239413-
GWHAAZE00000002CDS104238856104238959-
GWHAAZE00000002CDS104238686104238749-
GWHAAZE00000002CDS104238278104238333-
GWHAAZE00000002CDS104237907104237987-
GWHAAZE00000002CDS104237655104237714-
GWHAAZE00000002CDS104237461104237552-
GWHAAZE00000002CDS104237030104237149-
GWHAAZE00000002CDS104236686104236838-
GWHAAZE00000002CDS104236130104236185-
Transcript Sequence

Network for GWHGAAZE009171

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08423.12Rad51763294.40E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10869RAD51L1, RAD51B Homologous recombination map03440

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.082
SRR3591706second leaf0.773
SRR3591707mature leaf0.762
SRR3591708Shoot apex4.416
SRR3591709Stem1.828
SRR3591710White floral bud2.650
SRR3591711White flower2.681
SRR3591712Green floral bud3.325
SRR3591713Yellow flower1.697
SRP173429 SRR8316895Juvenile bud stage 2.347
SRR8316896Juvenile bud stage 5.003
SRR8316897Juvenile bud stage 2.596
SRR8316894Third green stage 2.028
SRR8316900Third green stage 3.962
SRR8316901Third green stage 4.213
SRR8316898Complete white stage 1.282
SRR8316899Complete white stage 3.372
SRR8316903Complete white stage 2.387
SRR8316902Silver flowering stage1.718
SRR8316904Silver flowering stage1.561
SRR8316905Silver flowering stage1.317
SRR8316906Gold flowering stage 3.725
SRR8316907Gold flowering stage 4.326
SRR8316908Gold flowering stage 3.867
SRP132670SRR6706286Control2.248
SRR6706287Light intensity 50%2.038
SRR6706288Light intensity 20%2.587
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.054
CNS0095593Slightly white alabastrum(diploid) 23.289
CNS0095594Slightly white alabastrum(diploid) 33.917
CNS0095595Whole white alabastrum(diploid) 24.034
CNS0095596Whole white alabastrum(diploid) 33.075
CNS0095597Whole white alabastrum(diploid) 43.270
CNS0095598Silvery flower (diploied) 13.588
CNS0095599Silvery flower (diploied) 23.301
CNS0095600Silvery flower (diploied) 32.687
CNS0095601Golden flower (diploid) 12.657
CNS0095602Golden flower (diploid) 22.086
CNS0095603Golden flower (diploid) 31.720
CNS0095604Slightly white alabastrum(tetraploid) 13.419
CNS0095605Slightly white alabastrum(tetraploid) 22.837
CNS0095606Slightly white alabastrum(tetraploid) 34.404
CNS0095607Whole white alabastrum(tetraploid) 12.776
CNS0095608Whole white alabastrum(tetraploid) 24.144
CNS0095609Whole white alabastrum(tetraploid) 33.115
CNS0095610Silvery flower (tetraploid) 11.885
CNS0095611Silvery flower (tetraploid) 21.962
CNS0095612Silvery flower (tetraploid) 33.468
CNS0095613Golden flower (tetraploid) 11.327
CNS0095614Golden flower (tetraploid) 21.058
CNS0095615Golden flower (tetraploid) 31.480
CRA001975CRR073297Stem 13.995
CRR073298Stem 24.588
CRR073299Stem 34.012
CRR073300Leaf 12.302
CRR073301Leaf 23.106
CRR073302Leaf 33.129
CRR073303Juvenile bud 13.316
CRR073304Juvenile bud 21.125
CRR073305Juvenile bud 31.478
CRR073306Third green 10.963
CRR073307Third green 21.232
CRR073308Third green 31.851
CRR073309Second white 11.987
CRR073310Second white 23.975
CRR073311Second white 30.967
CRR073312Silver flowering 11.983
CRR073313Silver flowering 20.784
CRR073314Silver flowering 31.033
CRR073315Gold flowering 11.672
CRR073316Gold flowering 21.744
CRR073317Gold flowering 32.372
CRR073318Tawny withering 12.700
CRR073319Tawny withering 21.863
CRR073320Tawny withering 31.530