Gene detail

Detail information of GWHGAAZE009170

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284749.2	1.0336E-139	PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9SK03\|RAP27_ARATH	1E-99	Ethylene-responsive transcription factor RAP2-7
trEMBL	tr\|F6GTW6\|F6GTW6_VITVI	4E-140	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43630.1}
TAIR10	AT2G28550.3	8E-91	related to AP2.7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	104203592	104206053	-
GWHAAZE00000002	mRNA	104203592	104206053	-
GWHAAZE00000002	exon	104203592	104203818	-
GWHAAZE00000002	exon	104203935	104204038	-
GWHAAZE00000002	exon	104204160	104204204	-
GWHAAZE00000002	exon	104204423	104204574	-
GWHAAZE00000002	exon	104204716	104204803	-
GWHAAZE00000002	exon	104204907	104204937	-
GWHAAZE00000002	exon	104205030	104205055	-
GWHAAZE00000002	exon	104205479	104206053	-
GWHAAZE00000002	CDS	104205479	104206053	-
GWHAAZE00000002	CDS	104205030	104205055	-
GWHAAZE00000002	CDS	104204907	104204937	-
GWHAAZE00000002	CDS	104204716	104204803	-
GWHAAZE00000002	CDS	104204423	104204574	-
GWHAAZE00000002	CDS	104204160	104204204	-
GWHAAZE00000002	CDS	104203935	104204038	-
GWHAAZE00000002	CDS	104203592	104203818	-

Transcript Sequence
>GWHTAAZE009180 ATGTTGGATCTCAATCTCAGTATTGTTCACGACGAAAACGTGATAATAGTGGCAGAAAAATATTCCGAAGGTCAAATGGAAGAATCAGGCACTTCGAATTCATCAATCCTTAATGCCGAAGGCTCGAGTAATGCCGGCGATGACGACACGTGCTCGACACGTGCTGCCGCCAGCAATATATCTGCCTTCAGCAATATATCTGCCTTCAATTTTGGTATCATGAATGTACAAAATCAGTTCAGTAACAAAAACTACTACGAAGAAGTGAGTGATGACCTGGCAACTCCGCCCAAGTTTGTGACTCAGCAACTATTTCCAATCAGTACTGGAGGAGGAGTTGGACTAAACCAGGGACAGGGATCCGGTTCTTCGGCTTCATCGTTTCGTCCTAATTTGGTTGATCTCTCGTTCGGAAAAGCTGGTAGTAATCGAGATCAAGAAATGAAAATCTTACAACAGCAACCGCCACAGCAACAGCCGGCTAAGAAGAGTAGGCGAGGACCAAGGTCTCGTAGCTCACAATATAGAGGAGTCACGTTCTATAGGAGAACTGGTAGATGGGAATCTCATATCTGGGATTGTGGGAAACAGGTTTATTTGGGTGGATTTGACACTGCTCATGCTGCTGCTAGAGCCTACGATCGAGCTGCCCTTAAGTTTCGGGGTTTTGATGCTGACATAAATTTTAACCTTAGTGATTACGAGGAGGATATGAAGCAGTTGGAGCTGAAGAATCTGACCAAGGAAGAATTTGTGCACATACTTCGTCGGCAGAGCACTGGTTTCTCAAGGGGAAGCTCAAAATACAGAGGGGTAATGCTGCACAAATGTGGCAGATGGGAAGCTCGTATGGGGCAGTTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAATGAAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTATCAGATGTAATGGCAGGGAAGCAGTCACCAACTTCGAGGCGAGTGCATATGACAGGGAAATGACTTCTCAGGCCCCTAATGGAGATGGCGAACACAATCTTGATCTCAATTTGGGGATTTCTACTTCATCCGTTGGACATGGTCCTAAGGAAAATGGAAGTTTGGGGCATTTCCAGTTCCATTCTTATGATATGCATGATGCTAGGAGATTAAAGGTAACATACTATGAAAAAAAGTTGTACACATTTTCTCCTTGGCAACTACAGTTCAATATGAAAACTGGTGAATCTACTAGCATATTAGAAGAGTAA

Network for GWHGAAZE009170

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	174	222	3.20E-10
PF00847.21	AP2	267	316	4.40E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-AP2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.700
	SRR3591706	second leaf	8.092
	SRR3591707	mature leaf	32.486
	SRR3591708	Shoot apex	2.346
	SRR3591709	Stem	6.581
	SRR3591710	White floral bud	2.718
	SRR3591711	White flower	10.408
	SRR3591712	Green floral bud	1.773
	SRR3591713	Yellow flower	5.272
SRP173429	SRR8316895	Juvenile bud stage	1.214
	SRR8316896	Juvenile bud stage	1.383
	SRR8316897	Juvenile bud stage	0.579
	SRR8316894	Third green stage	0.507
	SRR8316900	Third green stage	2.595
	SRR8316901	Third green stage	2.824
	SRR8316898	Complete white stage	1.888
	SRR8316899	Complete white stage	6.063
	SRR8316903	Complete white stage	5.454
	SRR8316902	Silver flowering stage	1.910
	SRR8316904	Silver flowering stage	3.034
	SRR8316905	Silver flowering stage	0.548
	SRR8316906	Gold flowering stage	1.693
	SRR8316907	Gold flowering stage	4.891
	SRR8316908	Gold flowering stage	7.103
SRP132670	SRR6706286	Control	5.267
	SRR6706287	Light intensity 50%	5.379
	SRR6706288	Light intensity 20%	4.289
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.985
	CNS0095593	Slightly white alabastrum(diploid) 2	2.053
	CNS0095594	Slightly white alabastrum(diploid) 3	0.629
	CNS0095595	Whole white alabastrum(diploid) 2	1.015
	CNS0095596	Whole white alabastrum(diploid) 3	0.121
	CNS0095597	Whole white alabastrum(diploid) 4	1.023
	CNS0095598	Silvery flower (diploied) 1	1.483
	CNS0095599	Silvery flower (diploied) 2	1.312
	CNS0095600	Silvery flower (diploied) 3	5.892
	CNS0095601	Golden flower (diploid) 1	0.091
	CNS0095602	Golden flower (diploid) 2	4.131
	CNS0095603	Golden flower (diploid) 3	4.275
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.516
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.427
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.242
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.524
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.438
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.573
	CNS0095610	Silvery flower (tetraploid) 1	13.799
	CNS0095611	Silvery flower (tetraploid) 2	5.036
	CNS0095612	Silvery flower (tetraploid) 3	5.572
	CNS0095613	Golden flower (tetraploid) 1	12.637
	CNS0095614	Golden flower (tetraploid) 2	11.519
	CNS0095615	Golden flower (tetraploid) 3	7.370
CRA001975	CRR073297	Stem 1	2.580
	CRR073298	Stem 2	1.928
	CRR073299	Stem 3	0.571
	CRR073300	Leaf 1	2.664
	CRR073301	Leaf 2	3.076
	CRR073302	Leaf 3	2.146
	CRR073303	Juvenile bud 1	1.653
	CRR073304	Juvenile bud 2	0.804
	CRR073305	Juvenile bud 3	3.930
	CRR073306	Third green 1	1.655
	CRR073307	Third green 2	1.754
	CRR073308	Third green 3	2.381
	CRR073309	Second white 1	3.863
	CRR073310	Second white 2	5.543
	CRR073311	Second white 3	6.399
	CRR073312	Silver flowering 1	12.067
	CRR073313	Silver flowering 2	15.598
	CRR073314	Silver flowering 3	13.856
	CRR073315	Gold flowering 1	1.706
	CRR073316	Gold flowering 2	4.486
	CRR073317	Gold flowering 3	0.696
	CRR073318	Tawny withering 1	7.550
	CRR073319	Tawny withering 2	20.905
	CRR073320	Tawny withering 3	3.371