Detail information of GWHGAAZE009151


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011089867.13.1117E-150PREDICTED: uncharacterized protein LOC105170690 [Sesamum indicum]
Swissprottr|P0CE10|Y4102_ARATH1E-15Putative uncharacterized protein At4g01020, chloroplastic (Precursor)
trEMBLtr|B9HD80|B9HD80_POPTR2E-143Uncharacterized protein {ECO:0000313|EMBL:EEE92686.2}
TAIR10AT5G60250.13E-89zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene103664346103667465-
GWHAAZE00000002mRNA103664346103667465-
GWHAAZE00000002exon103664346103664544-
GWHAAZE00000002exon103666699103667465-
GWHAAZE00000002CDS103666699103667465-
GWHAAZE00000002CDS103664346103664544-
Transcript Sequence

Network for GWHGAAZE009151

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13456.7RVT_32516.80E-06
PF01485.22IBR1402108.50E-14
PF01485.22IBR2262765.80E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0004523molecular_functionRNA-DNA hybrid ribonuclease activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.251
SRR3591706second leaf6.267
SRR3591707mature leaf8.319
SRR3591708Shoot apex12.193
SRR3591709Stem14.309
SRR3591710White floral bud14.584
SRR3591711White flower16.360
SRR3591712Green floral bud12.230
SRR3591713Yellow flower17.033
SRP173429 SRR8316895Juvenile bud stage 7.375
SRR8316896Juvenile bud stage 13.507
SRR8316897Juvenile bud stage 4.773
SRR8316894Third green stage 3.717
SRR8316900Third green stage 9.130
SRR8316901Third green stage 11.549
SRR8316898Complete white stage 4.492
SRR8316899Complete white stage 14.064
SRR8316903Complete white stage 6.834
SRR8316902Silver flowering stage6.054
SRR8316904Silver flowering stage7.522
SRR8316905Silver flowering stage3.198
SRR8316906Gold flowering stage 10.688
SRR8316907Gold flowering stage 10.750
SRR8316908Gold flowering stage 12.605
SRP132670SRR6706286Control5.818
SRR6706287Light intensity 50%6.848
SRR6706288Light intensity 20%6.341
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.443
CNS0095593Slightly white alabastrum(diploid) 212.661
CNS0095594Slightly white alabastrum(diploid) 313.796
CNS0095595Whole white alabastrum(diploid) 211.856
CNS0095596Whole white alabastrum(diploid) 38.041
CNS0095597Whole white alabastrum(diploid) 47.474
CNS0095598Silvery flower (diploied) 112.453
CNS0095599Silvery flower (diploied) 210.568
CNS0095600Silvery flower (diploied) 313.969
CNS0095601Golden flower (diploid) 114.192
CNS0095602Golden flower (diploid) 214.440
CNS0095603Golden flower (diploid) 314.979
CNS0095604Slightly white alabastrum(tetraploid) 110.882
CNS0095605Slightly white alabastrum(tetraploid) 29.853
CNS0095606Slightly white alabastrum(tetraploid) 311.714
CNS0095607Whole white alabastrum(tetraploid) 16.377
CNS0095608Whole white alabastrum(tetraploid) 28.016
CNS0095609Whole white alabastrum(tetraploid) 310.028
CNS0095610Silvery flower (tetraploid) 111.353
CNS0095611Silvery flower (tetraploid) 210.295
CNS0095612Silvery flower (tetraploid) 310.313
CNS0095613Golden flower (tetraploid) 113.325
CNS0095614Golden flower (tetraploid) 212.628
CNS0095615Golden flower (tetraploid) 312.669
CRA001975CRR073297Stem 110.070
CRR073298Stem 28.760
CRR073299Stem 310.599
CRR073300Leaf 18.130
CRR073301Leaf 210.327
CRR073302Leaf 38.768
CRR073303Juvenile bud 19.400
CRR073304Juvenile bud 27.637
CRR073305Juvenile bud 39.425
CRR073306Third green 18.136
CRR073307Third green 27.864
CRR073308Third green 39.516
CRR073309Second white 19.634
CRR073310Second white 29.455
CRR073311Second white 38.358
CRR073312Silver flowering 18.296
CRR073313Silver flowering 29.458
CRR073314Silver flowering 39.302
CRR073315Gold flowering 13.106
CRR073316Gold flowering 25.618
CRR073317Gold flowering 33.465
CRR073318Tawny withering 112.923
CRR073319Tawny withering 215.192
CRR073320Tawny withering 313.611