Detail information of GWHGAAZE009121


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007015416.10Geminivirus rep interacting kinase 2 [Theobroma cacao]
Swissprottr|Q5HZ38|GRIK2_ARATH0Serine/threonine-protein kinase GRIK2
trEMBLtr|A0A061GT50|A0A061GT50_THECC0Geminivirus rep interacting kinase 2 {ECO:0000313|EMBL:EOY33035.1}
TAIR10AT5G60550.14E-136geminivirus rep interacting kinase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene102989104102999411-
GWHAAZE00000002mRNA102989104102999411-
GWHAAZE00000002exon102999335102999411-
GWHAAZE00000002exon102994695102994737-
GWHAAZE00000002exon102993575102993649-
GWHAAZE00000002exon102993450102993494-
GWHAAZE00000002exon102993195102993269-
GWHAAZE00000002exon102992669102992756-
GWHAAZE00000002exon102992378102992502-
GWHAAZE00000002exon102991846102991941-
GWHAAZE00000002exon102991102102991168-
GWHAAZE00000002exon102990674102990789-
GWHAAZE00000002exon102990458102990536-
GWHAAZE00000002exon102989104102989279-
GWHAAZE00000002CDS102999335102999411-
GWHAAZE00000002CDS102994695102994737-
GWHAAZE00000002CDS102993575102993649-
GWHAAZE00000002CDS102993450102993494-
GWHAAZE00000002CDS102993195102993269-
GWHAAZE00000002CDS102992669102992756-
GWHAAZE00000002CDS102992378102992502-
GWHAAZE00000002CDS102991846102991941-
GWHAAZE00000002CDS102991102102991168-
GWHAAZE00000002CDS102990674102990789-
GWHAAZE00000002CDS102990458102990536-
GWHAAZE00000002CDS102989104102989279-
Transcript Sequence

Network for GWHGAAZE009121

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase513121.10E-56
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyCAMK_CAMKL-LKB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf74.942
SRR3591706second leaf45.016
SRR3591707mature leaf51.289
SRR3591708Shoot apex61.628
SRR3591709Stem104.125
SRR3591710White floral bud101.070
SRR3591711White flower113.091
SRR3591712Green floral bud64.230
SRR3591713Yellow flower118.654
SRP173429 SRR8316895Juvenile bud stage 37.097
SRR8316896Juvenile bud stage 54.344
SRR8316897Juvenile bud stage 19.458
SRR8316894Third green stage 22.229
SRR8316900Third green stage 64.788
SRR8316901Third green stage 67.375
SRR8316898Complete white stage 39.440
SRR8316899Complete white stage 94.016
SRR8316903Complete white stage 62.350
SRR8316902Silver flowering stage51.914
SRR8316904Silver flowering stage65.668
SRR8316905Silver flowering stage34.755
SRR8316906Gold flowering stage 112.386
SRR8316907Gold flowering stage 116.253
SRR8316908Gold flowering stage 114.006
SRP132670SRR6706286Control55.545
SRR6706287Light intensity 50%60.754
SRR6706288Light intensity 20%62.038
CNP0000432CNS0095592Slightly white alabastrum(diploid) 147.853
CNS0095593Slightly white alabastrum(diploid) 245.420
CNS0095594Slightly white alabastrum(diploid) 348.195
CNS0095595Whole white alabastrum(diploid) 247.278
CNS0095596Whole white alabastrum(diploid) 351.679
CNS0095597Whole white alabastrum(diploid) 452.655
CNS0095598Silvery flower (diploied) 166.866
CNS0095599Silvery flower (diploied) 244.154
CNS0095600Silvery flower (diploied) 382.899
CNS0095601Golden flower (diploid) 144.934
CNS0095602Golden flower (diploid) 276.749
CNS0095603Golden flower (diploid) 371.030
CNS0095604Slightly white alabastrum(tetraploid) 141.973
CNS0095605Slightly white alabastrum(tetraploid) 239.525
CNS0095606Slightly white alabastrum(tetraploid) 362.516
CNS0095607Whole white alabastrum(tetraploid) 139.437
CNS0095608Whole white alabastrum(tetraploid) 238.829
CNS0095609Whole white alabastrum(tetraploid) 346.495
CNS0095610Silvery flower (tetraploid) 176.197
CNS0095611Silvery flower (tetraploid) 274.828
CNS0095612Silvery flower (tetraploid) 380.353
CNS0095613Golden flower (tetraploid) 168.211
CNS0095614Golden flower (tetraploid) 272.966
CNS0095615Golden flower (tetraploid) 382.368
CRA001975CRR073297Stem 152.640
CRR073298Stem 249.740
CRR073299Stem 342.019
CRR073300Leaf 158.756
CRR073301Leaf 258.676
CRR073302Leaf 340.525
CRR073303Juvenile bud 153.613
CRR073304Juvenile bud 235.360
CRR073305Juvenile bud 352.625
CRR073306Third green 142.123
CRR073307Third green 244.370
CRR073308Third green 338.356
CRR073309Second white 136.433
CRR073310Second white 246.794
CRR073311Second white 351.049
CRR073312Silver flowering 147.090
CRR073313Silver flowering 244.665
CRR073314Silver flowering 342.084
CRR073315Gold flowering 122.814
CRR073316Gold flowering 237.049
CRR073317Gold flowering 322.942
CRR073318Tawny withering 159.500
CRR073319Tawny withering 258.160
CRR073320Tawny withering 357.591