Detail information of GWHGAAZE009117


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAFQ98370.10hydroxymethylbutenyl diphosphate synthase [Camellia sinensis]
Swissprottr|F4K0E8|ISPG_ARATH04-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic (Precursor)
trEMBLtr|K7PRX9|K7PRX9_CAMSI0Hydroxymethylbutenyl diphosphate synthase {ECO:0000313|EMBL:AFQ98370.1}
TAIR10AT5G60600.104-hydroxy-3-methylbut-2-enyl diphosphate synthase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene102935494102942969-
GWHAAZE00000002mRNA102935494102942969-
GWHAAZE00000002exon102935494102935595-
GWHAAZE00000002exon102936113102936217-
GWHAAZE00000002exon102936431102936529-
GWHAAZE00000002exon102937006102937165-
GWHAAZE00000002exon102937250102937327-
GWHAAZE00000002exon102937417102937555-
GWHAAZE00000002exon102937647102937791-
GWHAAZE00000002exon102937947102938009-
GWHAAZE00000002exon102938313102938372-
GWHAAZE00000002exon102938518102938595-
GWHAAZE00000002exon102938932102939006-
GWHAAZE00000002exon102939121102939237-
GWHAAZE00000002exon102939957102940187-
GWHAAZE00000002exon102940273102940392-
GWHAAZE00000002exon102940651102940727-
GWHAAZE00000002exon102940840102940940-
GWHAAZE00000002exon102941022102941128-
GWHAAZE00000002exon102941668102941825-
GWHAAZE00000002exon102942756102942969-
GWHAAZE00000002CDS102942756102942969-
GWHAAZE00000002CDS102941668102941825-
GWHAAZE00000002CDS102941022102941128-
GWHAAZE00000002CDS102940840102940940-
GWHAAZE00000002CDS102940651102940727-
GWHAAZE00000002CDS102940273102940392-
GWHAAZE00000002CDS102939957102940187-
GWHAAZE00000002CDS102939121102939237-
GWHAAZE00000002CDS102938932102939006-
GWHAAZE00000002CDS102938518102938595-
GWHAAZE00000002CDS102938313102938372-
GWHAAZE00000002CDS102937947102938009-
GWHAAZE00000002CDS102937647102937791-
GWHAAZE00000002CDS102937417102937555-
GWHAAZE00000002CDS102937250102937327-
GWHAAZE00000002CDS102937006102937165-
GWHAAZE00000002CDS102936431102936529-
GWHAAZE00000002CDS102936113102936217-
GWHAAZE00000002CDS102935494102935595-
Transcript Sequence

Network for GWHGAAZE009117

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04551.15GcpE897301.10E-151
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03526gcpE, ispG Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0016114biological_processterpenoid biosynthetic process
GO:0055114biological_processoxidation-reduction process
GO:0008299biological_processisoprenoid biosynthetic process
GO:0044237biological_processcellular metabolic process
GO:0046429molecular_function4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
GO:0005506molecular_functioniron ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.517
SRR3591706second leaf363.033
SRR3591707mature leaf66.718
SRR3591708Shoot apex132.660
SRR3591709Stem4.895
SRR3591710White floral bud178.434
SRR3591711White flower157.773
SRR3591712Green floral bud65.808
SRR3591713Yellow flower182.052
SRP173429 SRR8316895Juvenile bud stage 103.198
SRR8316896Juvenile bud stage 72.211
SRR8316897Juvenile bud stage 39.282
SRR8316894Third green stage 13.738
SRR8316900Third green stage 35.569
SRR8316901Third green stage 41.710
SRR8316898Complete white stage 102.797
SRR8316899Complete white stage 76.703
SRR8316903Complete white stage 151.575
SRR8316902Silver flowering stage204.444
SRR8316904Silver flowering stage299.388
SRR8316905Silver flowering stage157.193
SRR8316906Gold flowering stage 528.058
SRR8316907Gold flowering stage 436.708
SRR8316908Gold flowering stage 517.374
SRP132670SRR6706286Control69.216
SRR6706287Light intensity 50%79.482
SRR6706288Light intensity 20%70.521
CNP0000432CNS0095592Slightly white alabastrum(diploid) 177.895
CNS0095593Slightly white alabastrum(diploid) 258.498
CNS0095594Slightly white alabastrum(diploid) 382.048
CNS0095595Whole white alabastrum(diploid) 2121.151
CNS0095596Whole white alabastrum(diploid) 316.714
CNS0095597Whole white alabastrum(diploid) 490.284
CNS0095598Silvery flower (diploied) 159.739
CNS0095599Silvery flower (diploied) 267.237
CNS0095600Silvery flower (diploied) 3312.276
CNS0095601Golden flower (diploid) 172.863
CNS0095602Golden flower (diploid) 2241.063
CNS0095603Golden flower (diploid) 3238.241
CNS0095604Slightly white alabastrum(tetraploid) 144.359
CNS0095605Slightly white alabastrum(tetraploid) 278.040
CNS0095606Slightly white alabastrum(tetraploid) 3276.927
CNS0095607Whole white alabastrum(tetraploid) 132.352
CNS0095608Whole white alabastrum(tetraploid) 214.245
CNS0095609Whole white alabastrum(tetraploid) 337.597
CNS0095610Silvery flower (tetraploid) 1306.770
CNS0095611Silvery flower (tetraploid) 2386.488
CNS0095612Silvery flower (tetraploid) 3432.291
CNS0095613Golden flower (tetraploid) 1434.934
CNS0095614Golden flower (tetraploid) 2518.375
CNS0095615Golden flower (tetraploid) 3962.851
CRA001975CRR073297Stem 1112.011
CRR073298Stem 2120.919
CRR073299Stem 3123.717
CRR073300Leaf 164.751
CRR073301Leaf 257.304
CRR073302Leaf 348.424
CRR073303Juvenile bud 167.549
CRR073304Juvenile bud 2116.327
CRR073305Juvenile bud 377.316
CRR073306Third green 1672.350
CRR073307Third green 2390.597
CRR073308Third green 3481.257
CRR073309Second white 1534.238
CRR073310Second white 2593.216
CRR073311Second white 3745.504
CRR073312Silver flowering 1583.360
CRR073313Silver flowering 2453.013
CRR073314Silver flowering 3412.400
CRR073315Gold flowering 135.367
CRR073316Gold flowering 256.605
CRR073317Gold flowering 374.685
CRR073318Tawny withering 1133.532
CRR073319Tawny withering 289.676
CRR073320Tawny withering 3275.059