Gene detail

Detail information of GWHGAAZE009115

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009604512.1	6.8812E-146	PREDICTED: protein phosphatase 2C 37-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9ZW21\|P2C24_ARATH	2E-133	Probable protein phosphatase 2C 24
trEMBL	tr\|Q8RVG0\|Q8RVG0_TOBAC	3E-146	Protein phosphatase 2C {ECO:0000313\|EMBL:CAC84141.2}
TAIR10	AT2G29380.1	2E-108	highly ABA-induced PP2C gene 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	102879427	102881134	+
GWHAAZE00000002	mRNA	102879427	102881134	+
GWHAAZE00000002	exon	102879427	102879810	+
GWHAAZE00000002	exon	102880018	102880335	+
GWHAAZE00000002	exon	102880712	102881134	+
GWHAAZE00000002	CDS	102879427	102879810	+
GWHAAZE00000002	CDS	102880018	102880335	+
GWHAAZE00000002	CDS	102880712	102881134	+

Transcript Sequence
>GWHTAAZE009125 ATGGCAGAGATCTGCAGCAGCGGAGTAGTGGTTAGCGAGACTGACAGTTCGAAGCGGTGTGAAACGATTTCGCGAGCGGCGAGGCGGCGGAGGATGGAGATCAGGCGAATGAAGGTCGTCTCGCCGGAGACTGACAAGCGGCGGAAGTTGCAAATGTGTGCGGAGGCAGCGGCGTTTTCTGAAGAGTGCGAGAGCTCCGATGGCAAACGAGCTAGTTCTGAGTCGCCAGATCTGTGCCCTAACTACGGCCTCACGTCGGTTTGTGGAAGGAGACGAGATATGGAGGATGCGGTGGCGGTTCATCCATCGTTTTGTGCGAGAGATAATGAACAAATCTCCGATTTGCATTACTTTGGTGTTTATGATGGCCATGGATGTTCTCATGTGGCTATGAAGTGCAGAGATCGATTACATGAACTGGTGAAAGAAGAGATGGTGAAGGAAGATGAATCATCGGAGTGGAAGAACGTGATGGAGCGGAGCTTCAAACGGATGGACGAGGAGGTGATTGAAGTGAAGGAAGGTGCTAGTTCCGGCCCTAGCTGTAGATGTGAGCACCAGGCGCCAGCTTGTTATGCAGTCGGATCGGCAGCTGTGGTGTCTGTTCTAACGCCCGAGAAGATTATAGTAGCTAATTGCGGTGATTCGAGAGCTGTTCTCTGTCGTAGTGGCAAAGCCATTCCACTCTCTGTTGATCACAAGCCGGATCGACCAGATGAGCTTAAGCGGATCGAAGCAGAAGGCGGCCGTGTAATATATTGGGACTGCGCACGTGTGCTTGGTGTTCTGGCTCTGTCTAGAGCAATAGGTGACATCTATTTGAAGCCATATGTGAGCTGTGAACCTGAGGTAACAATTACGGACCGTACGGATGAGGATGAGTGTCTGATACTAGCGAGCGATGGATTATGGGACGTAGTTTCCAACGAAACCGTGTGTGGCGTTGCACGCATGTGGCCGAAAGGGAAAACTCCGGCAGGGCGAGGATCAGAGAGTAGTGTTGATAGTGTTAAGAACTTGGAGTATGATGCGTCGATGCTGTTGACGAAGTTGGCTATGTCGAGGCGTAGTAGTGACAATATTAGCGTGGTTGTGATTGATCTAAGGAAGGAGAAGGAAATCTAA

Network for GWHGAAZE009115

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	82	359	5.80E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14497	PP2C	MAPK signaling pathway - plant	map04016
K14497	PP2C	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0043169	molecular_function	cation binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.167
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.688
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.322
	SRR3591710	White floral bud	69.186
	SRR3591711	White flower	300.449
	SRR3591712	Green floral bud	3.251
	SRR3591713	Yellow flower	475.926
SRP173429	SRR8316895	Juvenile bud stage	0.193
	SRR8316896	Juvenile bud stage	0.283
	SRR8316897	Juvenile bud stage	0.100
	SRR8316894	Third green stage	0.060
	SRR8316900	Third green stage	0.163
	SRR8316901	Third green stage	0.312
	SRR8316898	Complete white stage	36.228
	SRR8316899	Complete white stage	1.665
	SRR8316903	Complete white stage	75.185
	SRR8316902	Silver flowering stage	113.740
	SRR8316904	Silver flowering stage	97.956
	SRR8316905	Silver flowering stage	33.356
	SRR8316906	Gold flowering stage	258.061
	SRR8316907	Gold flowering stage	265.031
	SRR8316908	Gold flowering stage	314.950
SRP132670	SRR6706286	Control	0.789
	SRR6706287	Light intensity 50%	1.262
	SRR6706288	Light intensity 20%	0.316
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.420
	CNS0095593	Slightly white alabastrum(diploid) 2	0.476
	CNS0095594	Slightly white alabastrum(diploid) 3	1.885
	CNS0095595	Whole white alabastrum(diploid) 2	0.446
	CNS0095596	Whole white alabastrum(diploid) 3	1.057
	CNS0095597	Whole white alabastrum(diploid) 4	1.823
	CNS0095598	Silvery flower (diploied) 1	36.299
	CNS0095599	Silvery flower (diploied) 2	70.289
	CNS0095600	Silvery flower (diploied) 3	164.321
	CNS0095601	Golden flower (diploid) 1	124.653
	CNS0095602	Golden flower (diploid) 2	237.461
	CNS0095603	Golden flower (diploid) 3	234.274
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.669
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.322
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.163
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.519
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.646
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.107
	CNS0095610	Silvery flower (tetraploid) 1	226.605
	CNS0095611	Silvery flower (tetraploid) 2	157.003
	CNS0095612	Silvery flower (tetraploid) 3	82.120
	CNS0095613	Golden flower (tetraploid) 1	316.740
	CNS0095614	Golden flower (tetraploid) 2	352.516
	CNS0095615	Golden flower (tetraploid) 3	522.675
CRA001975	CRR073297	Stem 1	0.797
	CRR073298	Stem 2	0.442
	CRR073299	Stem 3	0.256
	CRR073300	Leaf 1	0.571
	CRR073301	Leaf 2	1.244
	CRR073302	Leaf 3	0.264
	CRR073303	Juvenile bud 1	0.219
	CRR073304	Juvenile bud 2	1.238
	CRR073305	Juvenile bud 3	0.551
	CRR073306	Third green 1	136.772
	CRR073307	Third green 2	67.552
	CRR073308	Third green 3	75.548
	CRR073309	Second white 1	261.353
	CRR073310	Second white 2	405.188
	CRR073311	Second white 3	331.370
	CRR073312	Silver flowering 1	398.938
	CRR073313	Silver flowering 2	480.118
	CRR073314	Silver flowering 3	534.980
	CRR073315	Gold flowering 1	0.056
	CRR073316	Gold flowering 2	0.594
	CRR073317	Gold flowering 3	0.041
	CRR073318	Tawny withering 1	0.109
	CRR073319	Tawny withering 2	0.152
	CRR073320	Tawny withering 3	0.050