Gene detail

Detail information of GWHGAAZE009096

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010651185.1	0	PREDICTED: receptor-like serine/threonine-protein kinase NCRK [Vitis vinifera]
Swissprot	tr\|Q8VYY5\|NCRK_ARATH	0	Receptor-like serine/threonine-protein kinase NCRK (Precursor)
trEMBL	tr\|D7SL06\|D7SL06_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16334.3}
TAIR10	AT2G28250.2	4E-144	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	102254931	102262620	+
GWHAAZE00000002	mRNA	102254931	102262620	+
GWHAAZE00000002	exon	102254931	102255000	+
GWHAAZE00000002	exon	102255154	102255273	+
GWHAAZE00000002	exon	102255412	102255528	+
GWHAAZE00000002	exon	102255647	102255919	+
GWHAAZE00000002	exon	102256139	102256380	+
GWHAAZE00000002	exon	102257348	102257647	+
GWHAAZE00000002	exon	102257907	102258140	+
GWHAAZE00000002	exon	102258972	102259127	+
GWHAAZE00000002	exon	102262221	102262620	+
GWHAAZE00000002	CDS	102254931	102255000	+
GWHAAZE00000002	CDS	102255154	102255273	+
GWHAAZE00000002	CDS	102255412	102255528	+
GWHAAZE00000002	CDS	102255647	102255919	+
GWHAAZE00000002	CDS	102256139	102256380	+
GWHAAZE00000002	CDS	102257348	102257647	+
GWHAAZE00000002	CDS	102257907	102258140	+
GWHAAZE00000002	CDS	102258972	102259127	+
GWHAAZE00000002	CDS	102262221	102262277	+
GWHAAZE00000002	three_prime_UTR	102262278	102262620	+

Transcript Sequence
>GWHTAAZE009106 ATGAAGTTCCAACTGAAAGTTTCACTCGCTTGTCTCATTGGCTTGATATGGATTCAACAAATTCTTTGCGATGAGCTTTCTGGTACGCCTGGCCTGAACAAGTGGACATGTATCTGCTATTCTGCAAACCAAGCGAATCAGAGCTTTGTCATTCCAAATAACTGTTCTTCATCTTGTGATTGCAGTCCTGCTGCAAGAGAGTCAACTGGAAACAGATGGATATGCATCTGTGATGCCGATAGATTCCCTAAAGTGGTCACCGATAATTATGACACCGGCTGTTTTACGGACTGCAATTGCAATTCTGGTTCTTCAAGTGATGTGCAGACTTCAAAGAAGCGAGTTTCGTCAAAACTTATTGTGATCATTCTCTTGATATGTGTAGTGCTCACTGCAATTGCATCTCTCGCTTCATTGTTATGTTATGCCTATACAAGGGACAAATGCCCTATTCAACGGCCTCTATTCTCATCGGATAGAGATTCAAGTAACAACAGTGCTACCAATCTAATAAACCACAGGACTAAGTCAGTGCCAGAATATAGCTTCTATATAGGTTCTCCAGATAATCGTATGATAGGGTGCGTTCGCAAGTCTTCATTCTCCTTCAGAAGTAGAGCAGGAACATTACACGGAACAATTAAACAATTTCCATACTCTGAATTGGAAAATGCAACCAATAAGTTCTCAGATTCTAATTTGATAGGACTTGGGGGAAGCAGCCATGTTTACCGTGGCCATCTCAAAGATGGTAGAATTGTTGCAGTGAAGCGGATGAGAGCTTTGTTAGGGCCTGATGCAGAATTTGTTTTTGCCACAGAGATTGAATTAATATCAAGACTCCACCATTGCCATGTGGTGCCTTTACTCGGTTACTGCTCCGAATACCAAGGAAAAAAACATCCAGAGAGACTGCTAGTATTTGAGTACATGGCCCGTGGTAATCTTCGAGAGTGTTTGGATGCGGGTTCAGGGAAATCCCTGGATTGGGTAACCCGGGTGGAAATTGCACTTGGTGCTGCCAGGGGCTTGGAGTATCTCCATGAAGCAGCTGCCCCGAGAATTCTGCACAGAGATGTCAAATCCACAAACATTCTTTTGGATGAGAACTGGAGAGCTAAGATTACTGATCTAGGCATGGCTAAGCGTTTGACAACCGATGGGTTACCAAGTTGTACAAATTCTCCGGCAAGAATGCAGGGGACATTTGGGTATTTTGCACCAGAGTACGCAATTATTGGCAGAGCTTCTCCTAAGTCTGATGTTTTCAGTTTTGGGGTTGTTCTTCTCGAGCTTATTAGTGGCCGGCATCCCATCCACAAGTCTGATAAAAGGGAGGAAAGCCTTGTCATATGGGCTATGCCACTTCTGCAAGATAGTAGGAGAGTGATATTGGAGTTGCCGGACCCGCATTTCCAAGGGAAGTTCCCGGAAGAAGAGATGCAGATTGCGGCTTACTTAACCAAGGAGTGCCTTTTGATGGATCCTGACTCTCGGCCAACCATGAGTGAGCTTGTGGTTTCTATGTTGTTGTGGTCTGTTTGCAAGGTGTTGTCCTCCACTGTTTGAGCTGGGCGAAATCCTCCTCTATAAGGAAAATATGCAACGTTCCTTCAAAATTTAACCTCTATTTTTCTGGTGCAAATCATTTTTAACATTTATTTAATTTGTTTGAGATGTCTCTCTTGTAATTGTGTGCAGTGTTTTCCATTTCTTTCCTTCTTTTTTTTTTCCTTTTGTATTGTAAGCACACCTCAGTTTCTATGGTAATGGTACCAGCTAGCGCCTCTTTCCATCTGACGAGCCAGCCAACATTGCACACAAATTTCCAGAAAACACTGGAAAATCAATGAGATGTTGGCAATTTAATTACCCACTATCTTTCCATCTGACCACTCTACTCTTGTTAGAT

Network for GWHGAAZE009096

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	230	506	4.00E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XVI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.982
	SRR3591706	second leaf	1.424
	SRR3591707	mature leaf	0.247
	SRR3591708	Shoot apex	8.331
	SRR3591709	Stem	8.509
	SRR3591710	White floral bud	1.215
	SRR3591711	White flower	1.419
	SRR3591712	Green floral bud	0.765
	SRR3591713	Yellow flower	0.586
SRP173429	SRR8316895	Juvenile bud stage	2.999
	SRR8316896	Juvenile bud stage	2.326
	SRR8316897	Juvenile bud stage	1.456
	SRR8316894	Third green stage	1.263
	SRR8316900	Third green stage	1.702
	SRR8316901	Third green stage	1.247
	SRR8316898	Complete white stage	0.230
	SRR8316899	Complete white stage	1.434
	SRR8316903	Complete white stage	0.424
	SRR8316902	Silver flowering stage	0.302
	SRR8316904	Silver flowering stage	1.043
	SRR8316905	Silver flowering stage	0.219
	SRR8316906	Gold flowering stage	1.490
	SRR8316907	Gold flowering stage	1.506
	SRR8316908	Gold flowering stage	2.635
SRP132670	SRR6706286	Control	0.947
	SRR6706287	Light intensity 50%	1.119
	SRR6706288	Light intensity 20%	1.059
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.841
	CNS0095593	Slightly white alabastrum(diploid) 2	2.778
	CNS0095594	Slightly white alabastrum(diploid) 3	3.465
	CNS0095595	Whole white alabastrum(diploid) 2	1.708
	CNS0095596	Whole white alabastrum(diploid) 3	2.212
	CNS0095597	Whole white alabastrum(diploid) 4	2.417
	CNS0095598	Silvery flower (diploied) 1	1.732
	CNS0095599	Silvery flower (diploied) 2	1.764
	CNS0095600	Silvery flower (diploied) 3	0.633
	CNS0095601	Golden flower (diploid) 1	0.465
	CNS0095602	Golden flower (diploid) 2	0.665
	CNS0095603	Golden flower (diploid) 3	0.735
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.507
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.796
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.302
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.829
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.040
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.948
	CNS0095610	Silvery flower (tetraploid) 1	0.579
	CNS0095611	Silvery flower (tetraploid) 2	0.913
	CNS0095612	Silvery flower (tetraploid) 3	4.101
	CNS0095613	Golden flower (tetraploid) 1	0.166
	CNS0095614	Golden flower (tetraploid) 2	0.435
	CNS0095615	Golden flower (tetraploid) 3	0.292
CRA001975	CRR073297	Stem 1	6.351
	CRR073298	Stem 2	4.523
	CRR073299	Stem 3	4.959
	CRR073300	Leaf 1	2.029
	CRR073301	Leaf 2	1.514
	CRR073302	Leaf 3	1.524
	CRR073303	Juvenile bud 1	0.515
	CRR073304	Juvenile bud 2	0.153
	CRR073305	Juvenile bud 3	0.550
	CRR073306	Third green 1	2.189
	CRR073307	Third green 2	2.573
	CRR073308	Third green 3	1.926
	CRR073309	Second white 1	4.753
	CRR073310	Second white 2	2.714
	CRR073311	Second white 3	2.718
	CRR073312	Silver flowering 1	2.185
	CRR073313	Silver flowering 2	1.923
	CRR073314	Silver flowering 3	1.653
	CRR073315	Gold flowering 1	0.018
	CRR073316	Gold flowering 2	0.080
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	12.463
	CRR073319	Tawny withering 2	4.827
	CRR073320	Tawny withering 3	11.472