Detail information of GWHGAAZE009094


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010651195.10PREDICTED: helicase protein MOM1 isoform X1 [Vitis vinifera]
Swissprottr|Q9M658|MOM1_ARATH2E-113Helicase protein MOM1
trEMBLtr|A0A061GY85|A0A061GY85_THECC0Chromatin remodeling complex subunit, putative isoform 2 {ECO:0000313|EMBL:EOY34408.1}
TAIR10AT1G08060.26E-100ATP-dependent helicase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene102127337102170041+
GWHAAZE00000002mRNA102127337102170041+
GWHAAZE00000002exon102127337102127847+
GWHAAZE00000002exon102128338102128722+
GWHAAZE00000002exon102129974102130058+
GWHAAZE00000002exon102132022102132323+
GWHAAZE00000002exon102132651102132752+
GWHAAZE00000002exon102138631102138824+
GWHAAZE00000002exon102138945102139075+
GWHAAZE00000002exon102139826102140107+
GWHAAZE00000002exon102142388102142528+
GWHAAZE00000002exon102147781102148032+
GWHAAZE00000002exon102149046102149186+
GWHAAZE00000002exon102149273102149578+
GWHAAZE00000002exon102151057102151230+
GWHAAZE00000002exon102152059102152503+
GWHAAZE00000002exon102152587102152931+
GWHAAZE00000002exon102153498102153680+
GWHAAZE00000002exon102162831102162844+
GWHAAZE00000002exon102163186102163290+
GWHAAZE00000002exon102164054102164380+
GWHAAZE00000002exon102164450102165274+
GWHAAZE00000002exon102165546102165617+
GWHAAZE00000002exon102165892102166710+
GWHAAZE00000002exon102167736102167961+
GWHAAZE00000002exon102169035102169538+
GWHAAZE00000002exon102169755102170041+
GWHAAZE00000002CDS102127337102127847+
GWHAAZE00000002CDS102128338102128722+
GWHAAZE00000002CDS102129974102130058+
GWHAAZE00000002CDS102132022102132323+
GWHAAZE00000002CDS102132651102132752+
GWHAAZE00000002CDS102138631102138824+
GWHAAZE00000002CDS102138945102139075+
GWHAAZE00000002CDS102139826102140107+
GWHAAZE00000002CDS102142388102142528+
GWHAAZE00000002CDS102147781102148032+
GWHAAZE00000002CDS102149046102149186+
GWHAAZE00000002CDS102149273102149578+
GWHAAZE00000002CDS102151057102151230+
GWHAAZE00000002CDS102152059102152503+
GWHAAZE00000002CDS102152587102152931+
GWHAAZE00000002CDS102153498102153680+
GWHAAZE00000002CDS102162831102162844+
GWHAAZE00000002CDS102163186102163290+
GWHAAZE00000002CDS102164054102164380+
GWHAAZE00000002CDS102164450102165274+
GWHAAZE00000002CDS102165546102165617+
GWHAAZE00000002CDS102165892102166710+
GWHAAZE00000002CDS102167736102167961+
GWHAAZE00000002CDS102169035102169538+
GWHAAZE00000002CDS102169755102170041+
Transcript Sequence

Network for GWHGAAZE009094

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00385.25Chromo6066516.80E-06
PF00176.24SNF2_N7268582.80E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE009094.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 301234567891011Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.131
SRR3591706second leaf4.756
SRR3591707mature leaf3.870
SRR3591708Shoot apex9.872
SRR3591709Stem5.501
SRR3591710White floral bud4.639
SRR3591711White flower4.859
SRR3591712Green floral bud5.179
SRR3591713Yellow flower2.313
SRP173429 SRR8316895Juvenile bud stage 4.395
SRR8316896Juvenile bud stage 5.917
SRR8316897Juvenile bud stage 2.777
SRR8316894Third green stage 2.779
SRR8316900Third green stage 5.217
SRR8316901Third green stage 4.840
SRR8316898Complete white stage 0.641
SRR8316899Complete white stage 3.502
SRR8316903Complete white stage 2.464
SRR8316902Silver flowering stage1.051
SRR8316904Silver flowering stage1.823
SRR8316905Silver flowering stage0.580
SRR8316906Gold flowering stage 2.184
SRR8316907Gold flowering stage 2.114
SRR8316908Gold flowering stage 1.725
SRP132670SRR6706286Control3.953
SRR6706287Light intensity 50%4.110
SRR6706288Light intensity 20%4.192
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.535
CNS0095593Slightly white alabastrum(diploid) 23.199
CNS0095594Slightly white alabastrum(diploid) 32.843
CNS0095595Whole white alabastrum(diploid) 22.828
CNS0095596Whole white alabastrum(diploid) 32.194
CNS0095597Whole white alabastrum(diploid) 42.549
CNS0095598Silvery flower (diploied) 13.753
CNS0095599Silvery flower (diploied) 22.851
CNS0095600Silvery flower (diploied) 34.742
CNS0095601Golden flower (diploid) 14.810
CNS0095602Golden flower (diploid) 26.254
CNS0095603Golden flower (diploid) 36.226
CNS0095604Slightly white alabastrum(tetraploid) 13.719
CNS0095605Slightly white alabastrum(tetraploid) 23.328
CNS0095606Slightly white alabastrum(tetraploid) 37.548
CNS0095607Whole white alabastrum(tetraploid) 12.616
CNS0095608Whole white alabastrum(tetraploid) 21.831
CNS0095609Whole white alabastrum(tetraploid) 33.791
CNS0095610Silvery flower (tetraploid) 13.010
CNS0095611Silvery flower (tetraploid) 24.158
CNS0095612Silvery flower (tetraploid) 33.388
CNS0095613Golden flower (tetraploid) 11.274
CNS0095614Golden flower (tetraploid) 22.583
CNS0095615Golden flower (tetraploid) 32.886
CRA001975CRR073297Stem 17.000
CRR073298Stem 26.153
CRR073299Stem 34.519
CRR073300Leaf 15.164
CRR073301Leaf 24.619
CRR073302Leaf 32.569
CRR073303Juvenile bud 12.572
CRR073304Juvenile bud 21.500
CRR073305Juvenile bud 34.965
CRR073306Third green 10.677
CRR073307Third green 20.426
CRR073308Third green 30.785
CRR073309Second white 10.625
CRR073310Second white 20.723
CRR073311Second white 31.176
CRR073312Silver flowering 10.906
CRR073313Silver flowering 20.954
CRR073314Silver flowering 30.766
CRR073315Gold flowering 10.540
CRR073316Gold flowering 22.262
CRR073317Gold flowering 31.250
CRR073318Tawny withering 13.884
CRR073319Tawny withering 24.026
CRR073320Tawny withering 32.852