Gene detail

Detail information of GWHGAAZE009088

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05405.1	3.504E-125	unnamed protein product [Coffea canephora]
Swissprot	tr\|F4IB81\|LYK3_ARATH	5E-33	LysM domain receptor-like kinase 3 (Precursor)
trEMBL	tr\|A0A068UA28\|A0A068UA28_COFCA	1E-125	Coffea canephora DH200=94 genomic scaffold, scaffold_16 {ECO:0000313\|EMBL:CDP05405.1}
TAIR10	AT3G57120.1	2E-84	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	101887282	101888097	-
GWHAAZE00000002	mRNA	101887282	101888097	-
GWHAAZE00000002	exon	101887810	101888097	-
GWHAAZE00000002	exon	101887282	101887755	-
GWHAAZE00000002	CDS	101887810	101888097	-
GWHAAZE00000002	CDS	101887282	101887755	-

Transcript Sequence
>GWHTAAZE009098 ATGCCAGGCGGAAATTTATCGAGTTGCTTACGAAACCCTAGGAATCCTGATTTTACAGTACTTTCTACGTGGATGTCGCGAATGATAGTGGCAACTGATTTAGCGGACGGATTGGATTACATACATAACAATTCCGGCCAGAGTATAAACTTAATTCACAAATACGTGAAGAGTGGTAGTGTAATTGTAACGGAACCGTCGTTCAACGCGAAGATTTGCCATTTTGGCACGGCGGAGCTCATCGGCGAGACCGTAGGCGAAGCGGAGGAAGTGAAATCTATCAAAAAATTGAAAAGGTCGGGGATTCGAACAATACAATTCGAAGGCGTGAGAGGTTACATGTCGCCAGAGTTCCAATCAAACGGACTGGCAACGCAAAACTCCGACGTGTACGCTTTCGGAGTTGTACTCTTGGAGCTTTTGTCAGGCGAAGAGCCGTTAAAGTACAAGCTTGATAAGAAGACCGGAAACTTTGACAGAACATCGGTGATCGACGCCGCGAGGAAGGCCGTTGACGGCGGCGAGGGGTTGGATGGGAGGCTGAGGCAGTGGGTGGACCGGCGGTTGAAAGACTCGTTCCCTGTCGACGTAGCGGAGAAGGCGATACGTGTCGCGTTGGAGTGCGTACACGTGGATCCAGATAAGAGGCCAAACATGAGACGCGTGGCAAATAAGATATCGAAGCTTTATCTGGATTCGGCAAAGTGGTCGGAGAGAGTTAAGGTTCCGACGGAATTTTCAGTCTCCTTTGCCCCTCGGTGA

Network for GWHGAAZE009088

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	30	224	3.40E-17

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.728
	SRR3591706	second leaf	7.655
	SRR3591707	mature leaf	11.604
	SRR3591708	Shoot apex	12.957
	SRR3591709	Stem	13.178
	SRR3591710	White floral bud	11.677
	SRR3591711	White flower	15.559
	SRR3591712	Green floral bud	7.626
	SRR3591713	Yellow flower	14.166
SRP173429	SRR8316895	Juvenile bud stage	6.704
	SRR8316896	Juvenile bud stage	8.602
	SRR8316897	Juvenile bud stage	4.445
	SRR8316894	Third green stage	4.962
	SRR8316900	Third green stage	10.272
	SRR8316901	Third green stage	12.439
	SRR8316898	Complete white stage	4.450
	SRR8316899	Complete white stage	19.493
	SRR8316903	Complete white stage	7.082
	SRR8316902	Silver flowering stage	6.851
	SRR8316904	Silver flowering stage	6.644
	SRR8316905	Silver flowering stage	4.048
	SRR8316906	Gold flowering stage	11.289
	SRR8316907	Gold flowering stage	15.178
	SRR8316908	Gold flowering stage	9.808
SRP132670	SRR6706286	Control	15.675
	SRR6706287	Light intensity 50%	13.164
	SRR6706288	Light intensity 20%	11.990
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.507
	CNS0095593	Slightly white alabastrum(diploid) 2	14.765
	CNS0095594	Slightly white alabastrum(diploid) 3	11.910
	CNS0095595	Whole white alabastrum(diploid) 2	8.816
	CNS0095596	Whole white alabastrum(diploid) 3	5.188
	CNS0095597	Whole white alabastrum(diploid) 4	6.531
	CNS0095598	Silvery flower (diploied) 1	16.323
	CNS0095599	Silvery flower (diploied) 2	15.231
	CNS0095600	Silvery flower (diploied) 3	17.729
	CNS0095601	Golden flower (diploid) 1	15.355
	CNS0095602	Golden flower (diploid) 2	16.390
	CNS0095603	Golden flower (diploid) 3	15.437
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.207
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.808
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.178
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.829
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.800
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.693
	CNS0095610	Silvery flower (tetraploid) 1	19.687
	CNS0095611	Silvery flower (tetraploid) 2	14.501
	CNS0095612	Silvery flower (tetraploid) 3	5.631
	CNS0095613	Golden flower (tetraploid) 1	17.022
	CNS0095614	Golden flower (tetraploid) 2	19.585
	CNS0095615	Golden flower (tetraploid) 3	13.069
CRA001975	CRR073297	Stem 1	8.845
	CRR073298	Stem 2	10.674
	CRR073299	Stem 3	11.390
	CRR073300	Leaf 1	9.975
	CRR073301	Leaf 2	11.299
	CRR073302	Leaf 3	9.858
	CRR073303	Juvenile bud 1	13.820
	CRR073304	Juvenile bud 2	4.747
	CRR073305	Juvenile bud 3	14.173
	CRR073306	Third green 1	18.363
	CRR073307	Third green 2	24.574
	CRR073308	Third green 3	21.475
	CRR073309	Second white 1	15.436
	CRR073310	Second white 2	8.663
	CRR073311	Second white 3	8.937
	CRR073312	Silver flowering 1	14.051
	CRR073313	Silver flowering 2	17.432
	CRR073314	Silver flowering 3	15.063
	CRR073315	Gold flowering 1	10.527
	CRR073316	Gold flowering 2	4.720
	CRR073317	Gold flowering 3	7.440
	CRR073318	Tawny withering 1	13.056
	CRR073319	Tawny withering 2	13.826
	CRR073320	Tawny withering 3	14.062