Detail information of GWHGAAZE009062


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009588837.10PREDICTED: DNA ligase 1-like [Nicotiana tomentosiformis]
Swissprottr|Q42572|DNLI1_ARATH0DNA ligase 1 (Precursor)
trEMBLtr|A0A068UFR2|A0A068UFR2_COFCA0DNA ligase {ECO:0000256|RuleBase:RU000617}
TAIR10AT1G08130.10DNA ligase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene100973461100987883-
GWHAAZE00000002mRNA100973461100987883-
GWHAAZE00000002exon100987863100987883-
GWHAAZE00000002exon100980958100981368-
GWHAAZE00000002exon100979878100979994-
GWHAAZE00000002exon100977762100977863-
GWHAAZE00000002exon100977584100977679-
GWHAAZE00000002exon100977170100977400-
GWHAAZE00000002exon100976977100977071-
GWHAAZE00000002exon100976662100976749-
GWHAAZE00000002exon100976378100976509-
GWHAAZE00000002exon100975875100975987-
GWHAAZE00000002exon100975589100975690-
GWHAAZE00000002exon100975425100975486-
GWHAAZE00000002exon100975097100975168-
GWHAAZE00000002exon100974675100974748-
GWHAAZE00000002exon100974471100974527-
GWHAAZE00000002exon100973774100973851-
GWHAAZE00000002exon100973461100973571-
GWHAAZE00000002CDS100987863100987883-
GWHAAZE00000002CDS100980958100981368-
GWHAAZE00000002CDS100979878100979994-
GWHAAZE00000002CDS100977762100977863-
GWHAAZE00000002CDS100977584100977679-
GWHAAZE00000002CDS100977170100977400-
GWHAAZE00000002CDS100976977100977071-
GWHAAZE00000002CDS100976662100976749-
GWHAAZE00000002CDS100976378100976509-
GWHAAZE00000002CDS100975875100975987-
GWHAAZE00000002CDS100975589100975690-
GWHAAZE00000002CDS100975425100975486-
GWHAAZE00000002CDS100975097100975168-
GWHAAZE00000002CDS100974675100974748-
GWHAAZE00000002CDS100974471100974527-
GWHAAZE00000002CDS100973774100973851-
GWHAAZE00000002CDS100973461100973571-
Transcript Sequence

Network for GWHGAAZE009062

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04675.15DNA_ligase_A_N582334.80E-46
PF01068.22DNA_ligase_A_M2934978.90E-66
PF04679.16DNA_ligase_A_C5226331.70E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10747LIG1 DNA replication map03030
Base excision repairmap03410
Nucleotide excision repairmap03420
Mismatch repairmap03430

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0051103biological_processDNA ligation involved in DNA repair
GO:0071897biological_processDNA biosynthetic process
GO:0003910molecular_functionDNA ligase (ATP) activity
GO:0005524molecular_functionATP binding
GO:0003909molecular_functionDNA ligase activity
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.744
SRR3591706second leaf8.343
SRR3591707mature leaf8.835
SRR3591708Shoot apex19.484
SRR3591709Stem13.963
SRR3591710White floral bud11.870
SRR3591711White flower22.900
SRR3591712Green floral bud14.782
SRR3591713Yellow flower15.944
SRP173429 SRR8316895Juvenile bud stage 20.690
SRR8316896Juvenile bud stage 28.331
SRR8316897Juvenile bud stage 13.423
SRR8316894Third green stage 12.411
SRR8316900Third green stage 40.975
SRR8316901Third green stage 34.470
SRR8316898Complete white stage 10.124
SRR8316899Complete white stage 39.297
SRR8316903Complete white stage 22.121
SRR8316902Silver flowering stage13.693
SRR8316904Silver flowering stage19.959
SRR8316905Silver flowering stage9.455
SRR8316906Gold flowering stage 30.260
SRR8316907Gold flowering stage 31.660
SRR8316908Gold flowering stage 30.064
SRP132670SRR6706286Control27.548
SRR6706287Light intensity 50%32.183
SRR6706288Light intensity 20%37.248
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.876
CNS0095593Slightly white alabastrum(diploid) 212.536
CNS0095594Slightly white alabastrum(diploid) 312.634
CNS0095595Whole white alabastrum(diploid) 212.385
CNS0095596Whole white alabastrum(diploid) 312.896
CNS0095597Whole white alabastrum(diploid) 411.329
CNS0095598Silvery flower (diploied) 118.969
CNS0095599Silvery flower (diploied) 218.253
CNS0095600Silvery flower (diploied) 333.486
CNS0095601Golden flower (diploid) 114.328
CNS0095602Golden flower (diploid) 225.921
CNS0095603Golden flower (diploid) 323.142
CNS0095604Slightly white alabastrum(tetraploid) 116.706
CNS0095605Slightly white alabastrum(tetraploid) 212.146
CNS0095606Slightly white alabastrum(tetraploid) 335.482
CNS0095607Whole white alabastrum(tetraploid) 17.808
CNS0095608Whole white alabastrum(tetraploid) 28.747
CNS0095609Whole white alabastrum(tetraploid) 338.096
CNS0095610Silvery flower (tetraploid) 130.496
CNS0095611Silvery flower (tetraploid) 228.796
CNS0095612Silvery flower (tetraploid) 322.995
CNS0095613Golden flower (tetraploid) 112.785
CNS0095614Golden flower (tetraploid) 222.256
CNS0095615Golden flower (tetraploid) 316.452
CRA001975CRR073297Stem 124.753
CRR073298Stem 222.374
CRR073299Stem 324.024
CRR073300Leaf 134.006
CRR073301Leaf 231.562
CRR073302Leaf 325.004
CRR073303Juvenile bud 125.238
CRR073304Juvenile bud 216.209
CRR073305Juvenile bud 326.715
CRR073306Third green 17.202
CRR073307Third green 25.494
CRR073308Third green 37.375
CRR073309Second white 111.184
CRR073310Second white 212.413
CRR073311Second white 39.410
CRR073312Silver flowering 19.108
CRR073313Silver flowering 28.814
CRR073314Silver flowering 39.867
CRR073315Gold flowering 17.120
CRR073316Gold flowering 214.995
CRR073317Gold flowering 37.787
CRR073318Tawny withering 113.568
CRR073319Tawny withering 213.025
CRR073320Tawny withering 313.226