Detail information of GWHGAAZE009048


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002265477.10PREDICTED: intron-binding protein aquarius [Vitis vinifera]
Swissprottr|Q9FJR0|RENT1_ARATH3E-26Regulator of nonsense transcripts 1 homolog
trEMBLtr|F6GX76|F6GX76_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB44562.1}
TAIR10AT2G38770.10P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene100641295100663610-
GWHAAZE00000002mRNA100641295100663610-
GWHAAZE00000002exon100641295100641603-
GWHAAZE00000002exon100644111100644473-
GWHAAZE00000002exon100644601100645755-
GWHAAZE00000002exon100645865100646050-
GWHAAZE00000002exon100649737100650003-
GWHAAZE00000002exon100650553100651611-
GWHAAZE00000002exon100652602100652712-
GWHAAZE00000002exon100652822100653056-
GWHAAZE00000002exon100653782100653942-
GWHAAZE00000002exon100654036100654185-
GWHAAZE00000002exon100654298100654384-
GWHAAZE00000002exon100660674100660736-
GWHAAZE00000002exon100661760100661849-
GWHAAZE00000002exon100662921100663610-
GWHAAZE00000002five_prime_UTR100663329100663610-
GWHAAZE00000002CDS100662921100663328-
GWHAAZE00000002CDS100661760100661849-
GWHAAZE00000002CDS100660674100660736-
GWHAAZE00000002CDS100654298100654384-
GWHAAZE00000002CDS100654036100654185-
GWHAAZE00000002CDS100653782100653942-
GWHAAZE00000002CDS100652822100653056-
GWHAAZE00000002CDS100652602100652712-
GWHAAZE00000002CDS100650553100651611-
GWHAAZE00000002CDS100649737100650003-
GWHAAZE00000002CDS100645865100646050-
GWHAAZE00000002CDS100644601100645755-
GWHAAZE00000002CDS100644111100644473-
GWHAAZE00000002CDS100641295100641603-
Transcript Sequence

Network for GWHGAAZE009048

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16399.6Aquarius_N458730
PF13086.7AAA_1187611741.90E-27
PF13087.7AAA_12118313745.50E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12874AQR Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0000398biological_processmRNA splicing, via spliceosome
GO:0005681cellular_componentspliceosomal complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.706
SRR3591706second leaf12.237
SRR3591707mature leaf12.781
SRR3591708Shoot apex19.935
SRR3591709Stem16.924
SRR3591710White floral bud17.936
SRR3591711White flower21.655
SRR3591712Green floral bud18.589
SRR3591713Yellow flower15.749
SRP173429 SRR8316895Juvenile bud stage 15.020
SRR8316896Juvenile bud stage 17.705
SRR8316897Juvenile bud stage 9.626
SRR8316894Third green stage 7.750
SRR8316900Third green stage 19.887
SRR8316901Third green stage 17.474
SRR8316898Complete white stage 4.384
SRR8316899Complete white stage 19.501
SRR8316903Complete white stage 11.264
SRR8316902Silver flowering stage6.798
SRR8316904Silver flowering stage11.824
SRR8316905Silver flowering stage5.196
SRR8316906Gold flowering stage 16.621
SRR8316907Gold flowering stage 13.308
SRR8316908Gold flowering stage 15.795
SRP132670SRR6706286Control19.504
SRR6706287Light intensity 50%20.029
SRR6706288Light intensity 20%22.649
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.393
CNS0095593Slightly white alabastrum(diploid) 29.008
CNS0095594Slightly white alabastrum(diploid) 38.590
CNS0095595Whole white alabastrum(diploid) 28.992
CNS0095596Whole white alabastrum(diploid) 38.054
CNS0095597Whole white alabastrum(diploid) 47.731
CNS0095598Silvery flower (diploied) 115.236
CNS0095599Silvery flower (diploied) 211.077
CNS0095600Silvery flower (diploied) 325.089
CNS0095601Golden flower (diploid) 111.234
CNS0095602Golden flower (diploid) 227.565
CNS0095603Golden flower (diploid) 325.536
CNS0095604Slightly white alabastrum(tetraploid) 111.882
CNS0095605Slightly white alabastrum(tetraploid) 29.172
CNS0095606Slightly white alabastrum(tetraploid) 330.461
CNS0095607Whole white alabastrum(tetraploid) 17.070
CNS0095608Whole white alabastrum(tetraploid) 26.081
CNS0095609Whole white alabastrum(tetraploid) 320.953
CNS0095610Silvery flower (tetraploid) 122.986
CNS0095611Silvery flower (tetraploid) 228.174
CNS0095612Silvery flower (tetraploid) 316.447
CNS0095613Golden flower (tetraploid) 17.970
CNS0095614Golden flower (tetraploid) 219.213
CNS0095615Golden flower (tetraploid) 319.089
CRA001975CRR073297Stem 127.569
CRR073298Stem 223.675
CRR073299Stem 322.891
CRR073300Leaf 126.514
CRR073301Leaf 224.035
CRR073302Leaf 319.940
CRR073303Juvenile bud 121.213
CRR073304Juvenile bud 213.654
CRR073305Juvenile bud 327.020
CRR073306Third green 16.525
CRR073307Third green 25.404
CRR073308Third green 37.688
CRR073309Second white 17.226
CRR073310Second white 211.030
CRR073311Second white 313.249
CRR073312Silver flowering 18.249
CRR073313Silver flowering 28.348
CRR073314Silver flowering 39.417
CRR073315Gold flowering 17.804
CRR073316Gold flowering 214.983
CRR073317Gold flowering 37.207
CRR073318Tawny withering 118.677
CRR073319Tawny withering 213.148
CRR073320Tawny withering 315.495