Gene detail

Detail information of GWHGAAZE009021

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010278279.1	0	PREDICTED: serine/threonine-protein kinase SRPK isoform X1 [Nelumbo nucifera]
Swissprot	tr\|P51568\|AFC3_ARATH	3E-23	Serine/threonine-protein kinase AFC3
trEMBL	tr\|F6HKF5\|F6HKF5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55377.1}
TAIR10	AT3G44850.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	99843068	99847718	-
GWHAAZE00000002	mRNA	99843068	99847718	-
GWHAAZE00000002	exon	99843068	99843463	-
GWHAAZE00000002	exon	99843837	99843883	-
GWHAAZE00000002	exon	99844302	99844377	-
GWHAAZE00000002	exon	99845736	99846683	-
GWHAAZE00000002	exon	99847521	99847718	-
GWHAAZE00000002	CDS	99847521	99847718	-
GWHAAZE00000002	CDS	99845736	99846683	-
GWHAAZE00000002	CDS	99844302	99844377	-
GWHAAZE00000002	CDS	99843837	99843883	-
GWHAAZE00000002	CDS	99843068	99843463	-

Transcript Sequence
>GWHTAAZE009031 ATGGCCGACGACGATCGGAATAATAGCGAAGAGAGCGATTACACATCGGAGGACGAAGGAACGGAGGGTTACAGCCATGGGGGTTACCATTCGGTCCGAATTGGGGATTCCTTCAAGCACGATTGTTATGTTGTACAGAGCAAGCTCGGTTGGGGCCATTTTTCTACTGTTTGGCTTGCCTGGGATACTCACAGTTCTAGATACGTAGCACTAAAAGTACAAAAGAGTGCTCAGCATTACACCGAGGCAGCAATGGACGAAATCACAATCTTAAAGCAGATTACTGAGGAAGACCCTGATGACAAAAACTGTGTCGTAAAGCTTTTGGATCACTTTAAGCATTTGGGGCCTAATGGGAAGCATGTTTGCATGGTTTTCGAGTACTTGGGTGATAATCTTCTAACCCTAATCAAGTATTCAGACTACCGAGGAATTCCTCTTCACAAGTTGAAAGATATTTGCTTCCACATTTTAGGGGGTTTGGATTACTTGCATCGACAGCTATCTATTATTCACCCTGATTTGAAACCGGAGAATATATTGCTTTTGTCTATGATTGATCCAGCGAAAGATCCGAGTAAGTCAGGTGCCCCTCTTATACTGCCATCCAGTAAAAATAAGATTGTGTCCGATTGTGGGGCTTTGAAAGATTTTCGGAGTAAAGACAGTGATCTGACCAAGAACCAGAAAAAGAAAATTCGGAGAAAGGCCAAGAAGGCAGCTCAAAATTGTATGCAGAAGGAAGCTTTAGAGGAAGTTGAAGCAGATGGTGAAACAACTGGTAATGAAGATTCCCATCACAACGAGAAATCAAATGGGGACTCTGTTAAAGAGCAAACAAGTAGATCAAGGGATGCTCCCCAAGGAAATCAAGTTCGAAGGAGGGGGAGTCGCTCTATGAGGAAGAAGCTGTTGGCGGAGCTTGACACTAAGTGCAAATTGGTTGATTTTGGTAATGCTTGTTGGACGTATAAGCAATTTATGAATGATATTCAGACGAGGCAATACAGGTGTCCAGAAGTTCTCCTTGGATCAAAGTATTCTACTTCAGCTGATTTATGGTCGTTTGCTTGCATATGCTTTGAGCTGGCTACTGGTGATGTTCTCTTTGATCCTCATAGCGGTGACAACTATGACAGAGATGAGGATCACTTGGCCCTCACGATGGAGCTTCTTGGAATGATGCCGCTCAAGGTGAGAGTTCCATCTACTTATGAAGCACCCTTAAAACTGCGGAGTGCACCAAAACTTGTTCTATCATGTCCTCTAATTGCTCTAGGTGGGCGCTATTCTCGAGAATTCTTCAACAGATACGGCGATTTGAGGCACATCCGTCGATTGCATTTCTGGCCTCTCAACAAAGTGCTTATGGAGAAATACAAGTTTAGTGCGAAAGATGCAAGTGACTTAGCTGATTTCCTTGTCCCCATCCTTGATTTCATCCCGGAAAAAAGGCCTACAGCAGCACAATGCCTTACTCATCCGTGGATCAGCAGAGGCCCTCAACGCCTTTCAACTTCAATGCCTAGTTCTCTACCTCAGGCAACAGATAATGGTAGTTATGAGAAAATGAGGGAGGATGAGAGGGAGGCTATGGAGATTAGAGTTGGGAACATGGCCATTGGTGAAACTTCAAAACCCGTAAGCACAACAAAGCAAACTTGA

Network for GWHGAAZE009021

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	43	183	1.70E-20
PF00069.26	Pkinase	307	497	4.70E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_SRPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.399
	SRR3591706	second leaf	3.164
	SRR3591707	mature leaf	2.716
	SRR3591708	Shoot apex	4.802
	SRR3591709	Stem	5.578
	SRR3591710	White floral bud	2.135
	SRR3591711	White flower	2.191
	SRR3591712	Green floral bud	2.509
	SRR3591713	Yellow flower	1.942
SRP173429	SRR8316895	Juvenile bud stage	2.000
	SRR8316896	Juvenile bud stage	3.298
	SRR8316897	Juvenile bud stage	3.246
	SRR8316894	Third green stage	1.348
	SRR8316900	Third green stage	2.720
	SRR8316901	Third green stage	2.363
	SRR8316898	Complete white stage	1.085
	SRR8316899	Complete white stage	4.861
	SRR8316903	Complete white stage	2.098
	SRR8316902	Silver flowering stage	1.761
	SRR8316904	Silver flowering stage	1.972
	SRR8316905	Silver flowering stage	1.171
	SRR8316906	Gold flowering stage	2.935
	SRR8316907	Gold flowering stage	3.782
	SRR8316908	Gold flowering stage	5.352
SRP132670	SRR6706286	Control	1.941
	SRR6706287	Light intensity 50%	2.281
	SRR6706288	Light intensity 20%	2.302
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.504
	CNS0095593	Slightly white alabastrum(diploid) 2	1.109
	CNS0095594	Slightly white alabastrum(diploid) 3	1.417
	CNS0095595	Whole white alabastrum(diploid) 2	1.781
	CNS0095596	Whole white alabastrum(diploid) 3	1.272
	CNS0095597	Whole white alabastrum(diploid) 4	0.786
	CNS0095598	Silvery flower (diploied) 1	3.284
	CNS0095599	Silvery flower (diploied) 2	2.210
	CNS0095600	Silvery flower (diploied) 3	3.968
	CNS0095601	Golden flower (diploid) 1	2.838
	CNS0095602	Golden flower (diploid) 2	4.237
	CNS0095603	Golden flower (diploid) 3	4.106
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.190
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.844
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.297
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.151
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.801
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.862
	CNS0095610	Silvery flower (tetraploid) 1	3.581
	CNS0095611	Silvery flower (tetraploid) 2	4.637
	CNS0095612	Silvery flower (tetraploid) 3	5.445
	CNS0095613	Golden flower (tetraploid) 1	3.890
	CNS0095614	Golden flower (tetraploid) 2	4.468
	CNS0095615	Golden flower (tetraploid) 3	5.705
CRA001975	CRR073297	Stem 1	3.415
	CRR073298	Stem 2	3.306
	CRR073299	Stem 3	1.051
	CRR073300	Leaf 1	1.834
	CRR073301	Leaf 2	1.838
	CRR073302	Leaf 3	0.651
	CRR073303	Juvenile bud 1	0.656
	CRR073304	Juvenile bud 2	0.971
	CRR073305	Juvenile bud 3	0.330
	CRR073306	Third green 1	0.115
	CRR073307	Third green 2	0.360
	CRR073308	Third green 3	0.398
	CRR073309	Second white 1	0.117
	CRR073310	Second white 2	0.156
	CRR073311	Second white 3	0.437
	CRR073312	Silver flowering 1	0.303
	CRR073313	Silver flowering 2	0.160
	CRR073314	Silver flowering 3	0.031
	CRR073315	Gold flowering 1	1.350
	CRR073316	Gold flowering 2	1.692
	CRR073317	Gold flowering 3	0.825
	CRR073318	Tawny withering 1	1.149
	CRR073319	Tawny withering 2	0.749
	CRR073320	Tawny withering 3	0.388