Gene detail

Detail information of GWHGAAZE008990

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269994.2	0	PREDICTED: serine/threonine-protein kinase D6PKL1-like [Vitis vinifera]
Swissprot	tr\|Q9LFA2\|KIPK_ARATH	0	Serine/threonine-protein kinase KIPK
trEMBL	tr\|F6GW37\|F6GW37_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44172.1}
TAIR10	AT2G36350.1	1E-174	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	99136204	99139647	-
GWHAAZE00000002	mRNA	99136204	99139647	-
GWHAAZE00000002	exon	99136204	99137038	-
GWHAAZE00000002	exon	99138046	99139193	-
GWHAAZE00000002	exon	99139297	99139647	-
GWHAAZE00000002	CDS	99139297	99139647	-
GWHAAZE00000002	CDS	99138046	99139193	-
GWHAAZE00000002	CDS	99136204	99137038	-

Transcript Sequence
>GWHTAAZE009000 ATGGGTACTAGTGAAATTGTTGAATTAGATTCTGAACTCAAAATGGATGAAAATACCGGAAAGCGTCATATGCTGAAGCCTGGGCAAAAGTATTCTATTGAGGATGATATCAATAAATTATTTGAGGCGATAGACATCAGGGGTAAGGGTTTGAGTCCATCACAAGTCGCTAGGGACAGTTTACAGAAGAAGTCATTGAAAAGACCAATTCGAGTTAGTTCCTCTCAAGCATCGGGAATTGGAATCTCAGAGTCTGTAAGTTTAAAGCAAGCACTGAGAGGATTATGCATATCTCAAGCATCAGAAATGGCTGCTATGAAGCGGTTATCAAAACCGTCACGTTTGTCTGCGATCTCCCTTATCCCCGAAAAATTACTGGAATCTCAACATGGATTCAAAGTGGAAGTATCGGACCCGTCAAGTTCTTCCATTCACTTGGAAGATTTGTCAAAACGAAAAGCAAAATTGACCCAGAAAATGGTTGAGGCCGAGTTTGTGCCTACACTGCCCGGTATTGGCGGTGACATTTTATATACAGATTTGGAGAAAAACGCGAAACTGAAGTCTACCCATTCTTCATTTGCCACTCTTAGTAACAAGAAGCTCTCTGTGGTGGATGAGATTTTGGACGAATCAATAGGAAATGAAAAGGGGCAAAAAGCCAACTTGCATTCTGCTTCCTCTCTATTTAAGTCAAAAGCTAGTAATAACCTAACCAAATCTGCTAGCAGTGTGTCCCGTTTAGTCAAGCCTGCTTTCAAGAACAAGAACTTTGCCCAGAAGAAAATTGACCAAGATTCAACTTCGGTCACCAGCCCGTCCAATCATTGTAATGTATCAGTTGATAATGATTTGGGCCCTAGTACTAGTGCAAAGAGAAGCATCGAAGTGTCAAGTTCCATGGATTCTACTGATACTAAACCGGGCTTCACTTCGAATTGTAGCTACGTACCTGAAATTGTGGTTACAAAAGCGGATGAAAAATCAAGGTCAAGAGAAAAGGGGGAGTTCTCTCAAAGTTCAAAGAGTAGCATTGGCGAGTATAGCAGTAGTACAACAAGCTTGAGTGAAGAAAGCAACTTAAGTGGGTCAAGCCGAAGTGGCTCTCGGCCTCACATGTCAAAAGACTTGAGATGGGAGGCCATTCATTGTGTTCAGAAGCAACAGGGGAGCTTAGGTTTGAGGCACTTTAGGATGCTGAAGAAAATTGGTGGTGGGGATATTGGGACCGTTTATCTTGCTGAGCTTACTGGTACAAATTGTTTGTTTGCTTTGAAAGTCATGGACAATGAGTTTCTTGCTGCAAGGAAGAAGTTGCCAAGGGCTCAAACCGAAAGAGAAATACTTCAAATGTTGGATCACCCGTTTCTCCCTACACTTTATTTGCATTTTACGACGGATAAATTCTCGTGCTTGGTTATGGAATATTGTCCAGGTGGAGATCTGCATGTGCTAAGGCAAAAGCAACCAAACAAGAACTTCTCTGAACAAGCAGCCAGGTTTTATGTAGCTGAAGTCCTCCTCGCATTAGAGTACCTCCACATGCTTGGAGTTGTATACCGGGACCTAAAACCCGAAAACATACTAGTCCGCGAAGACGGTCACATCATGCTCTCAGATTTCGACTTATCACTCAGATGCTCTGCTAACCCTACCCTCCTTAAATCCTCACCACCAGTTATCGAGCCCCCCAAAAAGGTCTCGAGCCCATGCACTGAATCCAGCTGCATTGACCCGTTCTGCCTCCAACCCACCTGGCAAGTCCCGTGCTTCACCCCTCGGCTCCTAACCGCTGCATCAAAAGCTCGTAAGCTTAAATCCGACCTAGCTGCCCAGGTCAGCCCGCTACCCCAAGTGGTGGTGGAGCCCACAGCTGCCCGGTCCAACTCCTTCGTCGGGACCCATGAGTACTTAGCACCTGAGATCATCAAAGGAGAAGGGCACGGGAGTCCGGTTGATTGGTGGACTTTCGGGATCTTTTTGTATGAACTCGTATATGGTAAGACGCCCTTTAAGGGTACTGCGAATGAGGACACGTTGTCCAATGCAGTCTCGCAGTGTCTTAAGTTCCCCCAGAGTCCAGTGGTTAGCTCCCATGCCCGTGATTTGATCCGACGGCTGTTGAAGAAGGAGCCCGAGAATCGGTTGGGGTCGGTGAAAGGAGCGGCTGAGATTAAGCAGCACCCGTTTTTTGAGGGGTTGAATTGGGCATTGATACGGTGCGCAGTCCCACCGGAGATGCCAAAAATGTGTGATTTTGGGAGTGTGAATTTAGACGTATCTTCACAGTGTAAGGAGAGTGGGAAGTGTGACCCGGTGTTTGAGATGTTTTAG

Network for GWHGAAZE008990

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	398	551	1.50E-37
PF00069.26	Pkinase	628	731	1.10E-22

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.773
	SRR3591706	second leaf	5.397
	SRR3591707	mature leaf	7.765
	SRR3591708	Shoot apex	6.604
	SRR3591709	Stem	13.150
	SRR3591710	White floral bud	8.819
	SRR3591711	White flower	10.771
	SRR3591712	Green floral bud	9.762
	SRR3591713	Yellow flower	6.028
SRP173429	SRR8316895	Juvenile bud stage	3.656
	SRR8316896	Juvenile bud stage	4.753
	SRR8316897	Juvenile bud stage	2.835
	SRR8316894	Third green stage	3.142
	SRR8316900	Third green stage	7.396
	SRR8316901	Third green stage	7.750
	SRR8316898	Complete white stage	2.710
	SRR8316899	Complete white stage	14.527
	SRR8316903	Complete white stage	8.056
	SRR8316902	Silver flowering stage	3.575
	SRR8316904	Silver flowering stage	5.023
	SRR8316905	Silver flowering stage	2.264
	SRR8316906	Gold flowering stage	7.179
	SRR8316907	Gold flowering stage	7.397
	SRR8316908	Gold flowering stage	6.992
SRP132670	SRR6706286	Control	7.783
	SRR6706287	Light intensity 50%	7.604
	SRR6706288	Light intensity 20%	7.915
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.340
	CNS0095593	Slightly white alabastrum(diploid) 2	5.095
	CNS0095594	Slightly white alabastrum(diploid) 3	4.172
	CNS0095595	Whole white alabastrum(diploid) 2	4.095
	CNS0095596	Whole white alabastrum(diploid) 3	3.210
	CNS0095597	Whole white alabastrum(diploid) 4	3.739
	CNS0095598	Silvery flower (diploied) 1	7.095
	CNS0095599	Silvery flower (diploied) 2	6.585
	CNS0095600	Silvery flower (diploied) 3	11.653
	CNS0095601	Golden flower (diploid) 1	6.472
	CNS0095602	Golden flower (diploid) 2	11.236
	CNS0095603	Golden flower (diploid) 3	10.653
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.540
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.015
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.632
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.712
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.323
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.012
	CNS0095610	Silvery flower (tetraploid) 1	13.280
	CNS0095611	Silvery flower (tetraploid) 2	11.022
	CNS0095612	Silvery flower (tetraploid) 3	8.144
	CNS0095613	Golden flower (tetraploid) 1	4.661
	CNS0095614	Golden flower (tetraploid) 2	10.282
	CNS0095615	Golden flower (tetraploid) 3	7.087
CRA001975	CRR073297	Stem 1	11.317
	CRR073298	Stem 2	8.931
	CRR073299	Stem 3	9.201
	CRR073300	Leaf 1	13.988
	CRR073301	Leaf 2	13.807
	CRR073302	Leaf 3	7.673
	CRR073303	Juvenile bud 1	13.876
	CRR073304	Juvenile bud 2	16.225
	CRR073305	Juvenile bud 3	18.428
	CRR073306	Third green 1	5.592
	CRR073307	Third green 2	5.762
	CRR073308	Third green 3	6.583
	CRR073309	Second white 1	4.121
	CRR073310	Second white 2	5.637
	CRR073311	Second white 3	4.870
	CRR073312	Silver flowering 1	3.040
	CRR073313	Silver flowering 2	2.744
	CRR073314	Silver flowering 3	4.775
	CRR073315	Gold flowering 1	3.761
	CRR073316	Gold flowering 2	6.794
	CRR073317	Gold flowering 3	5.718
	CRR073318	Tawny withering 1	13.744
	CRR073319	Tawny withering 2	9.953
	CRR073320	Tawny withering 3	12.340