Gene detail

Detail information of GWHGAAZE008974

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010031500.1	6.1906E-134	PREDICTED: fatty acyl-CoA reductase 3 [Eucalyptus grandis]
Swissprot	tr\|Q93ZB9\|FACR3_ARATH	3E-124	Fatty acyl-CoA reductase 3
trEMBL	tr\|A0A059AAG1\|A0A059AAG1_EUCGR	2E-134	Uncharacterized protein {ECO:0000313\|EMBL:KCW50818.1}
TAIR10	AT4G33790.1	7E-96	Jojoba acyl CoA reductase-related male sterility protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	98522606	98526699	+
GWHAAZE00000002	mRNA	98522606	98526699	+
GWHAAZE00000002	exon	98522606	98522693	+
GWHAAZE00000002	exon	98523347	98523539	+
GWHAAZE00000002	exon	98524198	98524359	+
GWHAAZE00000002	exon	98524795	98524876	+
GWHAAZE00000002	exon	98525180	98525449	+
GWHAAZE00000002	exon	98526565	98526699	+
GWHAAZE00000002	CDS	98522606	98522693	+
GWHAAZE00000002	CDS	98523347	98523539	+
GWHAAZE00000002	CDS	98524198	98524359	+
GWHAAZE00000002	CDS	98524795	98524876	+
GWHAAZE00000002	CDS	98525180	98525449	+
GWHAAZE00000002	CDS	98526565	98526699	+

Transcript Sequence
>GWHTAAZE008984 ATGGGCATCAATACCTTAGGAGCTATGCATGTTGTAAACTTTGCAAAGAGATGTGCTAAACTACAATTGCTTCTCCATGTATCTACAGCCTATGTTTGTGGCAAAGGGGAAGGAGTGATACAAGAGAAGCCATTGAAGATGGGTGAATCACTCAATGGAGCCATGGGCTTAGATATTAATGCAGAGAAGAGGCTTGTGGAGGAAACATTGAATGATCTCAAAGCCAAAGAAGCTCCAAAAGATGTTGTTACAACAACCATGAAGGTTTTGGGTATTCAAAGGGCAAAGAAGTATGGATGGCCAAATACATATGTATTTACAAAGGCAATGGGAGAGATGGTACTGGGGCAGTTAAAAGGAACTCTTCCTATAGTTATTCTACGTCCCACTATGATAACTAGCACTATTAAAGAACCTTTCCCCGGTTGGATTGAAGGCTTGAGAACCATAGACAGCGTCACCGTTTCTTATGGTAAAGGAAAAGTGAAATGCTTCCTCGGAGATTTGGAGTCAATATTTGATGCTATACCAGGTGATATGGTAGTGAATTCCATGGTAGTGGCAATGGCAGCACATTCAAATAAACCAAATTCTCACATAATTTATCATGTGGGGTCCTCTCTAAGGAATCCTTTGAAATATAAAAGTATTCCAAATATTTCATACAATTATTTCACCAAAAATCCATGGATTGACCAAAATGGAAAGCCTATTAAGGTTGTTAAACCTACCATGTTGAAGACCATGGCTGGCTTTCGCATGTACATGGGCATTCGTTACATGCTAATGTTGAAGGTTTTGCGATTAGCAAATGTTATACTTCAACAAAATCACATAAAGGGCTTGTACGCGAACTCTAATAGAAAGATCAAACTTGCGATGCGCATGGCAGACTTATACAAACCCTACTTGTTCTTCAAAGGAATGTAA

Network for GWHGAAZE008974

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07993.13	NAD_binding_4	2	185	3.90E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13356	FAR	Cutin, suberine and wax biosynthesis	map00073
		Peroxisome	map04146
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.508
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.548
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	1.700
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.654
	SRR8316896	Juvenile bud stage	0.579
	SRR8316897	Juvenile bud stage	0.122
	SRR8316894	Third green stage	0.076
	SRR8316900	Third green stage	0.346
	SRR8316901	Third green stage	0.953
	SRR8316898	Complete white stage	0.362
	SRR8316899	Complete white stage	0.932
	SRR8316903	Complete white stage	0.276
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.168
	SRR8316905	Silver flowering stage	0.492
	SRR8316906	Gold flowering stage	3.366
	SRR8316907	Gold flowering stage	2.474
	SRR8316908	Gold flowering stage	5.590
SRP132670	SRR6706286	Control	0.378
	SRR6706287	Light intensity 50%	0.166
	SRR6706288	Light intensity 20%	0.219
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.063
	CNS0095593	Slightly white alabastrum(diploid) 2	0.026
	CNS0095594	Slightly white alabastrum(diploid) 3	0.722
	CNS0095595	Whole white alabastrum(diploid) 2	0.929
	CNS0095596	Whole white alabastrum(diploid) 3	0.745
	CNS0095597	Whole white alabastrum(diploid) 4	0.514
	CNS0095598	Silvery flower (diploied) 1	0.816
	CNS0095599	Silvery flower (diploied) 2	0.626
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	1.636
	CNS0095602	Golden flower (diploid) 2	0.968
	CNS0095603	Golden flower (diploid) 3	0.962
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.812
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.131
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.126
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.737
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.676
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.011
	CNS0095610	Silvery flower (tetraploid) 1	0.065
	CNS0095611	Silvery flower (tetraploid) 2	0.107
	CNS0095612	Silvery flower (tetraploid) 3	0.597
	CNS0095613	Golden flower (tetraploid) 1	0.138
	CNS0095614	Golden flower (tetraploid) 2	0.380
	CNS0095615	Golden flower (tetraploid) 3	0.038
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.038
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.052
	CRR073301	Leaf 2	0.012
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.186
	CRR073304	Juvenile bud 2	0.168
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.045
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.089
	CRR073313	Silver flowering 2	0.028
	CRR073314	Silver flowering 3	0.540
	CRR073315	Gold flowering 1	0.135
	CRR073316	Gold flowering 2	0.330
	CRR073317	Gold flowering 3	2.425
	CRR073318	Tawny withering 1	21.987
	CRR073319	Tawny withering 2	42.166
	CRR073320	Tawny withering 3	1.266