Gene detail

Detail information of GWHGAAZE008973

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN81280.1	2.0804E-55	hypothetical protein VITISV_041831 [Vitis vinifera]
Swissprot	tr\|Q0WRB0\|FACR5_ARATH	2E-45	Probable fatty acyl-CoA reductase 5
trEMBL	tr\|A5BM21\|A5BM21_VITVI	8E-56	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81280.1}
TAIR10	AT3G44550.1	9E-36	fatty acid reductase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	98520315	98522505	+
GWHAAZE00000002	mRNA	98520315	98522505	+
GWHAAZE00000002	exon	98520315	98520393	+
GWHAAZE00000002	exon	98520812	98520915	+
GWHAAZE00000002	exon	98522299	98522505	+
GWHAAZE00000002	CDS	98520315	98520393	+
GWHAAZE00000002	CDS	98520812	98520915	+
GWHAAZE00000002	CDS	98522299	98522505	+

Transcript Sequence
>GWHTAAZE008983 ATGGAAGTGGTTAACGTAGTTAGTTTTCTTGAGAACAAGACTATTTTGGTCACCGGTGCCACTGGCTTTCTAGCAAAGGTTCTTGTGGAAAAAATACTGAGAATTCAACCAAATGTGAAGAAGCTTTTACTTCTCTTAAGAACCACTGATACGAAATCAGCTCCACAACGCCTGCATGATGAGGTCTTGGGGAAAGAGTTGTTCAAAGTCGTAAGGAAGAGTTGGAGTGAAAATATAAATTCCCATTTATTGGAGAAGGTAATTCCCATTTCTGGTGACATTTCTTTTGAGAATTTGGGGATTACAGATTCTAAATTAAGAGAAGAAATGTTGGAAGAAATAGATATCATTGTTAATTCTGCAGCGACAACAAGTTTCAATGAGAGGTAA

Network for GWHGAAZE008973

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07993.13	NAD_binding_4	17	129	9.50E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13356	FAR	Cutin, suberine and wax biosynthesis	map00073
		Peroxisome	map04146
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.251
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.840
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.742
	SRR8316896	Juvenile bud stage	0.527
	SRR8316897	Juvenile bud stage	0.186
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.256
	SRR8316898	Complete white stage	0.161
	SRR8316899	Complete white stage	0.707
	SRR8316903	Complete white stage	0.493
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.307
	SRR8316905	Silver flowering stage	0.325
	SRR8316906	Gold flowering stage	0.538
	SRR8316907	Gold flowering stage	1.283
	SRR8316908	Gold flowering stage	4.792
SRP132670	SRR6706286	Control	0.126
	SRR6706287	Light intensity 50%	0.225
	SRR6706288	Light intensity 20%	0.264
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.116
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.137
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.657
	CNS0095602	Golden flower (diploid) 2	0.757
	CNS0095603	Golden flower (diploid) 3	0.881
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.103
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.113
	CNS0095612	Silvery flower (tetraploid) 3	0.405
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.570
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.108
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.410
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.059
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.649
	CRR073318	Tawny withering 1	9.865
	CRR073319	Tawny withering 2	13.319
	CRR073320	Tawny withering 3	1.092