Gene detail

Detail information of GWHGAAZE008969

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009611540.1	8.428E-172	PREDICTED: alcohol-forming fatty acyl-CoA reductase-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q39152\|FACR1_ARATH	1E-155	Fatty acyl-CoA reductase 1
trEMBL	tr\|D7TCY0\|D7TCY0_VITVI	3E-171	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28353.3}
TAIR10	AT5G22500.1	3E-127	fatty acid reductase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	98298058	98308291	-
GWHAAZE00000002	mRNA	98298058	98308291	-
GWHAAZE00000002	exon	98308233	98308291	-
GWHAAZE00000002	exon	98308010	98308110	-
GWHAAZE00000002	exon	98304469	98304661	-
GWHAAZE00000002	exon	98303998	98304159	-
GWHAAZE00000002	exon	98302398	98302479	-
GWHAAZE00000002	exon	98299409	98299678	-
GWHAAZE00000002	exon	98298972	98299099	-
GWHAAZE00000002	exon	98298058	98298211	-
GWHAAZE00000002	CDS	98308233	98308291	-
GWHAAZE00000002	CDS	98308010	98308110	-
GWHAAZE00000002	CDS	98304469	98304661	-
GWHAAZE00000002	CDS	98303998	98304159	-
GWHAAZE00000002	CDS	98302398	98302479	-
GWHAAZE00000002	CDS	98299409	98299678	-
GWHAAZE00000002	CDS	98298972	98299099	-
GWHAAZE00000002	CDS	98298058	98298211	-

Transcript Sequence
>GWHTAAZE008979 ATGTGGAGAGAAATAGACATCATTGTCAATTCAGCAGCGACAACAAATTTTGATGAAAGATATGATGTGGCCATGGGTATCAATACTTTTGGAGCCATGCATGTTGTGAACTTTGCAAAGAGATGTGCTAAGCTTCAATTGCTTCTCCATGTATCTACAGCTTTTGTTTGTGGGCAAAGGGAAGGACTAATACTAGAAAAGCCCATAGAGATGGGAGAGTCACTGAATGGAGCTTCGGGCTTAGATGTTGACGCGGAGAAAATACTTGTGGAGGAAACATTAAACGACCTCCTGTCTAAGGAAGCTACCCAAGAAGCTATTACAACAACATTGATGGATTTGGGCATTCAAAGGGCAAGGAAGTATGGGTGGCCAAATACGTATGTGTTTACAAAGGCAATGGGAGAAATGCTATTGGGGCACCTGAAAGGACGTCTTCCTATTGTTATCATGCGCCCAACTATCATAACCAGCACTATTAAAGAACCTTTTCCTGGTTGGGTTGAAGGCTTTAGAACCATAGATAGCATAACAGTTGCATACGGTAAAGGAAAACTAACATTCTTCCTCGGTGATTTGGGTTCAATTATTGATACTATACCAGGTGATATGGTGGTGAATTCAATGATTGTGGCAATGGTGATAAATTCAAATAATCCTAATTGTCATATGATATACCATGTGGGTTCCTCTCTAAGGAATCCACTTTGTTATGGCAATGTGAAGGACTTTTGTTATCGTTATTATACCAAATATCCATTATCTGATAAGGATGGAAGGCCACTCAAAATTGTCAAACCTACCATATTAAGTAGCATGGCTCGATTCCGCTTATACATGGGGATTCGTTACATGCTACCACTGAAGGTTTTGCAATTGGTGAATATGATACTTTACGGGCGCCTTCAAAACAATTGTTATAATTCAAATCGAAAGATCAATCTTGCAATGCGCTTGGGAGAACTTTATGAATCCTACGTATTCTTCAAGGGAGTATTTGATGACACAAACATTGAGAAATTGCGAACGGTGGCGAAAGAGAGCAATGTAGAGGAAGATGTGTTTTATTTTGATCCAAAGAGCTTCGACTGGGAAGACTACTTTATGAATATACACCTTCCAGGAGTTGTTAGATACGTAGTTAAATAG

Network for GWHGAAZE008969

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07993.13	NAD_binding_4	2	209	8.60E-51
PF03015.20	Sterile	284	382	2.60E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13356	FAR	Cutin, suberine and wax biosynthesis	map00073
		Peroxisome	map04146
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.219
	SRR3591706	second leaf	0.345
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	10.698
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.104
	SRR3591711	White flower	0.089
	SRR3591712	Green floral bud	4.633
	SRR3591713	Yellow flower	0.106
SRP173429	SRR8316895	Juvenile bud stage	1.220
	SRR8316896	Juvenile bud stage	0.687
	SRR8316897	Juvenile bud stage	0.650
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.028
	SRR8316901	Third green stage	0.051
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.162
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.207
	SRR6706287	Light intensity 50%	0.089
	SRR6706288	Light intensity 20%	0.157
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.147
	CNS0095593	Slightly white alabastrum(diploid) 2	0.326
	CNS0095594	Slightly white alabastrum(diploid) 3	0.074
	CNS0095595	Whole white alabastrum(diploid) 2	0.120
	CNS0095596	Whole white alabastrum(diploid) 3	0.282
	CNS0095597	Whole white alabastrum(diploid) 4	1.550
	CNS0095598	Silvery flower (diploied) 1	0.563
	CNS0095599	Silvery flower (diploied) 2	1.892
	CNS0095600	Silvery flower (diploied) 3	0.632
	CNS0095601	Golden flower (diploid) 1	0.471
	CNS0095602	Golden flower (diploid) 2	0.044
	CNS0095603	Golden flower (diploid) 3	0.042
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.141
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.348
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.782
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.762
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.819
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.372
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.059
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.147
	CRR073298	Stem 2	0.225
	CRR073299	Stem 3	0.386
	CRR073300	Leaf 1	0.050
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.165
	CRR073304	Juvenile bud 2	0.288
	CRR073305	Juvenile bud 3	0.318
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000