Gene detail

Detail information of GWHGAAZE008967

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009631058.1	5.7995E-141	PREDICTED: alcohol-forming fatty acyl-CoA reductase-like isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q93ZB9\|FACR3_ARATH	8E-114	Fatty acyl-CoA reductase 3
trEMBL	tr\|D7TCY0\|D7TCY0_VITVI	1E-138	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28353.3}
TAIR10	AT4G33790.1	6E-84	Jojoba acyl CoA reductase-related male sterility protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	98204661	98211092	+
GWHAAZE00000002	mRNA	98204661	98211092	+
GWHAAZE00000002	exon	98204661	98204792	+
GWHAAZE00000002	exon	98206174	98206376	+
GWHAAZE00000002	exon	98209052	98209213	+
GWHAAZE00000002	exon	98209474	98209555	+
GWHAAZE00000002	exon	98210279	98210545	+
GWHAAZE00000002	exon	98210720	98210847	+
GWHAAZE00000002	exon	98210939	98211092	+
GWHAAZE00000002	CDS	98204661	98204792	+
GWHAAZE00000002	CDS	98206174	98206376	+
GWHAAZE00000002	CDS	98209052	98209213	+
GWHAAZE00000002	CDS	98209474	98209555	+
GWHAAZE00000002	CDS	98210279	98210545	+
GWHAAZE00000002	CDS	98210720	98210847	+
GWHAAZE00000002	CDS	98210939	98211092	+

Transcript Sequence
>GWHTAAZE008977 ATGATGAATTTTGATTTTATGGATGTAGTTTTTGTGGAGAAGATACTTAGGGTTCAACCAAATGTGAAGAAGCTTTATCTTCTTCTTAGAGCCGCAGATAGCAAGTCAGCATTGCAAAGGTTAAATCATGAGATAATTGCAAAGGACTTGTTTAGGGTTCTAAGGGAGAAATGGGGTACAAATCTATATTCCCACATATCACAAAAGGTGACCCCGGTAGCTGGTGACATAACTCGTGACAACTTGGGAGTGGATGATTGTGATCTGTTGAACGAGATGACGGAAAAAGTAAATGTTGTTGTTAACCTAGCTGCCACAACAAACTTTGACGAAAGGGCAAGGAAATATGGATGGCCAAATACATATGTATTTACAAAGGCAATGGGAGAAATGCTCCTTGGAGATCTCAATAAAAATATGCCCTTAGCTATTCTTCGTCCTACAATCATAACCAGCACCTACAAAGAACCCTTTCCTGGTTGGGTTGAAGGTATCAGAACTGTTGATAGCATGCTTGTTGGTTTTGGAAAAGGAAAATTGACATGCTTCCTCGGAGACCCGGATTCTGTAATTGATTGTATACCAGCGGACATGGTGGTGAATGCTATGATTGCAGCCATAGTAGCAAATGCAAACCAACCTCGTGAGATTATATACCACGTTGGATCTTCCGTTTCTAACGCCGTCAAGTACAGTAGTATTCAAGACTATGGCCAATGTTACTTCACTAAGAATCCATGGGTTGACAAAGACGGAAAGCCCGTCAAAGTTGGCAAACTAACGGTGATGACCTCTATGGATAGTTTCCGCCGTTATATGACACTCCGTTACTTGCTTCCACTAAAGGCGTTTAAGGTTGTGAATACAACACTTTGCCAATTTTTCGAAGGCACCTACATGGACCTTAATCGAAAGATCAAGTTCATAATGCGATTGGTGGAACTTTATGAACCCTATTTGTTCTTTAAGGGCATTCACGATGATACGAACACAGAAAAATTGCGTATGGCAACAAGAGAGGGCGGTTCTGAGACAGACGTTTTCTACTTCGACCCGAAGTGTGTTATTTGGGAGGATTACTTCATGAATATTCACATTCCTGGCCTAGTCAAATACATATTTAAGTGA

Network for GWHGAAZE008967

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07993.13	NAD_binding_4	110	203	1.60E-25
PF03015.20	Sterile	277	375	6.30E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13356	FAR	Cutin, suberine and wax biosynthesis	map00073
		Peroxisome	map04146
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.119
	SRR3591707	mature leaf	0.269
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.099
	SRR3591710	White floral bud	0.103
	SRR3591711	White flower	0.079
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.011
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.633
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.066
	SRR8316901	Third green stage	0.053
	SRR8316898	Complete white stage	0.038
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.073
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.188
	SRR8316907	Gold flowering stage	0.229
	SRR8316908	Gold flowering stage	0.585
SRP132670	SRR6706286	Control	0.038
	SRR6706287	Light intensity 50%	0.016
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.196
	CNS0095593	Slightly white alabastrum(diploid) 2	0.064
	CNS0095594	Slightly white alabastrum(diploid) 3	0.078
	CNS0095595	Whole white alabastrum(diploid) 2	0.097
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.163
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.302
	CNS0095600	Silvery flower (diploied) 3	0.036
	CNS0095601	Golden flower (diploid) 1	0.098
	CNS0095602	Golden flower (diploid) 2	0.165
	CNS0095603	Golden flower (diploid) 3	0.123
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.025
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.163
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.129
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.071
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.050
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.272
	CRR073316	Gold flowering 2	0.384
	CRR073317	Gold flowering 3	1.181
	CRR073318	Tawny withering 1	4.160
	CRR073319	Tawny withering 2	3.512
	CRR073320	Tawny withering 3	3.144