Gene detail

Detail information of GWHGAAZE008959

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007206433.1	hypothetical protein PRUPE_ppa001509mg [Prunus persica]
Swissprot	tr\|Q9SWB4\|PARP3_SOYBN	Poly [ADP-ribose] polymerase 3
trEMBL	tr\|M5W1L8\|M5W1L8_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ07632.1}
TAIR10	AT5G22470.1	NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	97993590	97999093	+
GWHAAZE00000002	mRNA	97993590	97999093	+
GWHAAZE00000002	exon	97993590	97993897	+
GWHAAZE00000002	exon	97994665	97994860	+
GWHAAZE00000002	exon	97994952	97995062	+
GWHAAZE00000002	exon	97995310	97995367	+
GWHAAZE00000002	exon	97995474	97995543	+
GWHAAZE00000002	exon	97995720	97995894	+
GWHAAZE00000002	exon	97996029	97996132	+
GWHAAZE00000002	exon	97996591	97996828	+
GWHAAZE00000002	exon	97997054	97997181	+
GWHAAZE00000002	exon	97997500	97997576	+
GWHAAZE00000002	exon	97997640	97997800	+
GWHAAZE00000002	exon	97997882	97998091	+
GWHAAZE00000002	exon	97998178	97998280	+
GWHAAZE00000002	exon	97998346	97998428	+
GWHAAZE00000002	exon	97998513	97998911	+
GWHAAZE00000002	exon	97999025	97999093	+
GWHAAZE00000002	CDS	97993590	97993897	+
GWHAAZE00000002	CDS	97994665	97994860	+
GWHAAZE00000002	CDS	97994952	97995062	+
GWHAAZE00000002	CDS	97995310	97995367	+
GWHAAZE00000002	CDS	97995474	97995543	+
GWHAAZE00000002	CDS	97995720	97995894	+
GWHAAZE00000002	CDS	97996029	97996132	+
GWHAAZE00000002	CDS	97996591	97996828	+
GWHAAZE00000002	CDS	97997054	97997181	+
GWHAAZE00000002	CDS	97997500	97997576	+
GWHAAZE00000002	CDS	97997640	97997800	+
GWHAAZE00000002	CDS	97997882	97998091	+
GWHAAZE00000002	CDS	97998178	97998280	+
GWHAAZE00000002	CDS	97998346	97998428	+
GWHAAZE00000002	CDS	97998513	97998911	+
GWHAAZE00000002	CDS	97999025	97999093	+

Transcript Sequence
>GWHTAAZE008969 ATGAAGGTACATGAGACAAGGTCACATTCTCACTCATCTGGAGGAGAGGAAGAGAAAATGTTGACAAGGAAGCAAAAGGCTGCAGAGAGCAAGGGGAAAGATGACGAGCACCACGCAAAGAAGAAGGCCAAGTCGGAGAACAATAACAGGAAGGCCTCCGATGGGAAATCGAGGGACAAGATTGCAATGGAATTTGACAAGTTCTGTAAATCGACAAGCGAACACCTCTCCATCCAACAGATGCGAGATATTCTCGATGCCAATGGCCAGGATCCTTCGGGTTCCGATGATGCTGTGGTCCCTAGATGCCAAGATATGATGTTCTACGGACCCCTCGATAAGTGTCCGGTTTGCAGCTACAATTTGAAGTACAGTGGATCCCATTATTCTTGCAAAGGAGCATACAGTAAATGGTCCACTTGTACCTTTACCACTAGGGACTGTCCAAGGAAAGAGGAACCGATCCGATTCCCCAATTTCATTCAAGATACCGCCATTGCTGATCTGCTAAAAAATCAAGGACCTAAGAGTCGATCTCAAAGGGCTATTATTTCTAATAACAAACCAATTGAAGGAATGACCATTTCGCTCTCAGGCCGTCTATCTCGCACACATCAATATTGGAGGTCAGAGATAGATAAACATGGAGGGAAGGTTGCCAACTCAGTTATTGGTGTATCTTGTCTAGTTGTGTCCGCCACCGAGACAGAACGCGGTGGCTCATCCAAAGTAGCAGAAGCAGTGGAAAGAGGCATACCCATAGTTAGGGAAGAATGGTTGAGTGACAGCATCGAGAAGCAAGAACCTCAGCCGTTGGATGCTTATGATATTGTCAGCGATCTTGCTGTAGACGGCCAAGGAATCCCATGGGAAAAACAAGATCCTAGCAAAGAGGCCCTCGAATCCATTGCTGCAGAAGTAAAAGTATATGGAAAGAGAGGAGTACACAAAGACACCAAGTTACAAGAGCAAGGCAGGAAGATTCTCAAAAAGACGGACTATTGTACAACTGTGCCTTTTCACTATTGTGTCATGCAACTCATCACTGCTCCTGAGAACAAGTTGTACATGTACTACAAGAAGGGCCGAGTTGGTGATGATCCTCAAGCCGAGGAAAGGCTAGAGGAATGGGAAAATTTAGATGCTGCTATAAAGGAGTTCGCAAGGCTGTTTGAAGAGTTGACAGGAAATGAGTTTGAGCCATGGGAGAGAGAAAAGAAGTTCGAGAAGAAGTCACAGAAGTTCTTCGTCGTCGATATGGATGATGGATGTGATATTAGGCATGGAGGGCTTGGGCTTCGGCAGCTGGGGATTGCAACGGTACATAGCAAGCTTGATCCAATGGTTGCACATTTTATGAAAGTTCTTTGCAGTCAAGAGATCTACAGGTATGCTTTGATGGAGATGGGACATGATGCTCCTGATCTTCCTATGGGAATGCTCTCTAACCTCCATTTGCAAAGATGTGAAGAGCTGCTCCAAGTATTCGTAGAGAAACTGAAATCTCTGAAGGAAACTGGGCAAAAAGGTGCAGCCGTGTGGTATGATTTTAGCCAAAGATGGTTCACAATGATGCATTCAACTAGGCCCTTCATCTTTAGGGACTTTCAAGACCTTGCAGATCATGTTGCAGCTGCATTGGAGACCGTGAGGGATATAACTGTGGCTTCGCACCTTGTGGGTGATATGACCAGCAGTACCATAGATGACCCTCTGTTTGAGCAGTACAAGAAATTGGGTTGCTCTATTTCTCCCGTGAAAAAGGATTCTGACGACTACAAGATGATAGTGAAGTACCTCGAGAAAACTTATGAACCTTATAAAGTTGGCAAAATCAGTTACGGTGTATCAGTTGAAAATGTGTTCGCTGTTGAATTGAGTGCTTGCCCTTCATACGACGAGATAAAGAAATTACCAAACAAAGTTCTTCTTTGGTGTGGTACTAGGAGTTCAAATTTGGTGAGGCATTTGCACAAAGGATTCTTGCCTGCAATATGCTCACTTCCTGTTCCTGGATATATGTTTGGAAAGGCCATCATTTGTTCAGATGCTGCAGCAGAGGCGGCTAGATACAGTTTTACTGCAGTTGACAGGCCCGAGGGCTTCTTAGTTTTGGCAGTTGCTTCTTTGGGAGATCAAATCACAGAGGTCACAAGCCCACCTGAGGTAGTATGCGTACTTCACTGGTATCTAAAATTCCTTCTCACTATTGATGAAATGTGGGTTTTGCTTCGAGCAGGAGACCAAGTCATTGGAAGAGAGAAGGTTGGAGTGAAGGGACTTGGGAGGAAGAAAACAGATGAAAAAGAGCATTTCCTTTGGAAGGATGATATCAAGGTGCCGTGTGGGCGCCTCATGCCGTCCGAGCACAAGGATAGCCTTCTGGAGTACAATGAATATGCTGCTTATGATCCACAACAGGTGAGTATGAGGTTCTTGGTGGGAGTGAAGTTTGAAGAGGAGCATTTGGAGTATGACACGGCTGAGTGA

Network for GWHGAAZE008959

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08063.13	PADR1	101	151	2.50E-16
PF00533.27	BRCT	186	264	3.80E-08
PF05406.16	WGR	341	405	3.80E-10
PF02877.15	PARP_reg	443	576	3.20E-18
PF00644.21	PARP	590	719	2.00E-29
PF00644.21	PARP	754	818	4.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10798	PARP2_3_4	Base excision repair	map03410
		Apoptosis	map04210
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0006471	biological_process	protein ADP-ribosylation
GO:0003950	molecular_function	NAD+ ADP-ribosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.034
	SRR3591706	second leaf	0.099
	SRR3591707	mature leaf	0.061
	SRR3591708	Shoot apex	0.152
	SRR3591709	Stem	0.034
	SRR3591710	White floral bud	0.129
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.965
	SRR3591713	Yellow flower	0.049
SRP173429	SRR8316895	Juvenile bud stage	0.303
	SRR8316896	Juvenile bud stage	2.311
	SRR8316897	Juvenile bud stage	0.838
	SRR8316894	Third green stage	1.397
	SRR8316900	Third green stage	1.859
	SRR8316901	Third green stage	2.121
	SRR8316898	Complete white stage	0.034
	SRR8316899	Complete white stage	2.217
	SRR8316903	Complete white stage	0.247
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.059
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.545
	SRR6706287	Light intensity 50%	1.857
	SRR6706288	Light intensity 20%	1.792
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.745
	CNS0095593	Slightly white alabastrum(diploid) 2	1.412
	CNS0095594	Slightly white alabastrum(diploid) 3	2.582
	CNS0095595	Whole white alabastrum(diploid) 2	1.510
	CNS0095596	Whole white alabastrum(diploid) 3	2.107
	CNS0095597	Whole white alabastrum(diploid) 4	1.010
	CNS0095598	Silvery flower (diploied) 1	0.022
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.023
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.078
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.966
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.650
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.823
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.630
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.354
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.397
	CNS0095610	Silvery flower (tetraploid) 1	0.056
	CNS0095611	Silvery flower (tetraploid) 2	0.015
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.020
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.051
	CRR073298	Stem 2	1.483
	CRR073299	Stem 3	0.776
	CRR073300	Leaf 1	3.021
	CRR073301	Leaf 2	2.443
	CRR073302	Leaf 3	1.637
	CRR073303	Juvenile bud 1	2.223
	CRR073304	Juvenile bud 2	0.598
	CRR073305	Juvenile bud 3	2.043
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.001
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.442
	CRR073316	Gold flowering 2	0.220
	CRR073317	Gold flowering 3	0.386
	CRR073318	Tawny withering 1	0.132
	CRR073319	Tawny withering 2	0.130
	CRR073320	Tawny withering 3	0.058