Gene detail

Detail information of GWHGAAZE008951

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011090307.1	0	PREDICTED: probable receptor protein kinase TMK1 [Sesamum indicum]
Swissprot	tr\|P43298\|TMK1_ARATH	0	Probable receptor protein kinase TMK1 (Precursor)
trEMBL	tr\|F6HAB9\|F6HAB9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49198.1}
TAIR10	AT2G01820.1	1E-127	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	97622639	97626444	-
GWHAAZE00000002	mRNA	97622639	97626444	-
GWHAAZE00000002	exon	97622639	97623144	-
GWHAAZE00000002	exon	97624068	97626444	-
GWHAAZE00000002	CDS	97624068	97626444	-
GWHAAZE00000002	CDS	97622639	97623144	-

Transcript Sequence
>GWHTAAZE008961 ATGAACGAAGATAAAAAAAAGCTCCATGTTGCAGTACTTTTGTGCCTCATTACTTTGGTTAATGGTATTACAGACCCTAATGATTTTGAGGTTTTGAATGAGTTTAGAAATGGATTAGATAATCCAGAGCTCCTCGAATGGCCTGCTAAGGGCACCGATCCATGTGGACCTCCTTTATGGCCTCATGTGTTTTGTTCTAATGGCAGGGTGACCCAAATTCAAGTTCAGAAATTGGGTCTCAAGGGCACCTTACCCCAGAACTTGAATCGCCTCGAAAAACTCCAAAATTTGGGGTTTCAAAGGAACAAATTTCGGGGAAAGTTGCCCACATTTAGTGGATTATCGGAATTGCAGTATGCTTACTTAGGCTTAAATGAATTTGATACGATCCCTTCAGATTTCTTTCACGGACTTGCTAATGTACGTGTGTTAGCTTTGGACTATAACCCATTTAATGCGAGTACTGGTTGGGCTATACCCAACGAGATTCAAGATTCGGTTCAATTGTTGAATTTCTCTTGTGCAAAGTGTAATGTGTTAGGCCCATTGCCGGAGTTCTTCGGAAAATTTCCTTCCCTCATTACACTGGGACTTTCTTATAACCGATTATCCGGCGAGATTCCAGCAAGTTTTAGTGACTCAATGTTGCAGTTTTTGTGGTTAAATGACCAAGATGGAGATGGATTCAGTGGACCCATTGATGTTATTGGGTCAATGGTGGGGTTGACCGAGGTGTGGTTACATGGAAACCATTTTACAGGCACAATTCCTGATAGTGTTGGAGGTTTGACTTCTTTGAGACGGCTGAAACTCAGTAGGAATCAACTCGTTGGTCAAATTCCGCTGAGCCTGGCCAATATGGATTTGGAAATACTGAATTTAGAAAGCAATATGCTAATGGGTCCGATACCAAAGTTCAAAGCTGCGACAGTTACTTATTCTGAGAATTCATTTTGTCAATCAGTGCCCGGTCAGCAGTGTTCTCCTACTGTTAATGTGCTTTTGGATTTCCTTCGCCATTTGAATTACCCTTCGAATCTTGCTTCTAAATGGAGTGGTAATAATCCTTGTGAAGGTCCATGGTGGGGAATTACTTGCAACCACGAATCACAGGTTTCAGTTATAAATCTGCAGAGGCTCAAGTTGAACGGGAGCCTCAGTCCTTCACTTGCAAGTTTGGGTTCACTAGTCGAGATTCACCTTGGAGGAAACAATGTGGGCGGTCAAGTTCCGATGAATTTTACTAAACTGAAGTCACTGCGATTGTTGGATTTAACTGGAAACAATTTTCAGCCTCCATTACCGAAGTTTGGTGATGGTGCTAAGGTCATTATTGATGGTAATTCTCTATTAGTCCCTAATGGGACGCAGGGACCTCCGCCACCACCGATTACCAACCCATCACCACCTCTAAACAACTCATCACCGCCTCTAAACAACTCATCGCCGCCTCTAAACAACTCATCACCACCATCAGCAGGGAACTCGTCTAAGCCCATCCAAGAGCAGCCCAAATCGGGAACTTTCAGAGAATTCAAACTTGTTATTGTGATTTCAGTTGTAGCTTCTGTCATTTCAATTCTTCTCATGGCATTATTATGTACCCGGTGTTTCAAGTTCGGTAAAGAGAGTAAAGGGGCTCCTAGTGCATTTGTGATCCACCCCCAAGATCCATCTTACCCAGATAATATGATTAAAATAGCAATCGCTCATGACGTCACTAAAGGCACTCCACCTTTCAGTGTCTCTAAAAATGCGAGCGGTAGAGTGGAAAAGGCTCATATGATAGATGAGGGTAGTATGGTCATTTCGGCTAAGATCCTTCGTGAAGTTACCAACAATTTTGCTCCTGAAAACGAGCTGGGCCGTGGAGGATTTGGCGTTGTTTACAAGGGAGTACTGGAGGACGGGACCAAATTAGCGGTTAAGAGAATGGAGTCTACTATGATTAGTTCCAAAGCACTAGACGAGTTTCAGGCCGAAATTGCTGCGCTTTCCAGTGTTCGCCACCGTCATTTGGTTTCCCTATATGGGTACTCTGTTGAAGGCAATGAGAAACTTTTGGTTTACGAATATATGCCTCAAGGTGCTCTAAGTAGGCATCTATTTTATTGGAAAAAATTCAGTTTAGAGCCTCTTTCGTGGGCTAAAAGGCTCATTATTGCTTTGGACGTCGCGAGGGGGATGGAATATCTTCATAATTTGGCACACCAGAGCTTTATTCACCGAGACCTCAAATCATCAAACATTCTTCTCAGTGATGATTTTAGGGCAAAAGTCGCGGATTTTGGGTTGGTGAAACTTGCTCCTGATAGGGAGCGGTCAGTTGTAACTAGGCTTGCTGGTACATTTGGATATCTAGCACCTGAGTATGCTGTGACAGGGAAAGTCACGACTAAATCTGATGTCTTCAGCTTCGGAGTAGTGTTGATGGAAATTCTGACCGGATTAGTGGCACTAGATGAGCGCCGTTCTGAGGAGCACCGCTGCCTGGCCGAGTGGTTTTGGCAGATAAAATCCGACTGTGAGAAGGTAATCTCAGCTGTCGATCCGGCCCTTAATGCGACAGAGGAGATTTTCGATAGCATTTGTAGCGTAGCCGAACTAGCAGGACATTGCACCGTGAGGGATCCGAACCACCGTCCCGATATGGGGCATGCGGTGAACGTGCTGTCCCAATTGGTCGAGAAATGGAAACCATTTGACGAAGAGAAGGAATATTCTGGAATTGATTTTGCTCTGCCTCTTTCCCAGATGTTAAAGGGATGGAAAGAAAATGAAATGAAAGATTCTAGCGGTACAAGTCAGCAGGACAGCAAGGGAAGTATTCCAACCAGGCCTGGTGGATTTGCAGATTCCTTCAATTCTTCAGATGCACGATGA

Network for GWHGAAZE008951

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	26	66	9.20E-05
PF08263.13	LRRNT_2	332	367	0.00025
PF00069.26	Pkinase	618	888	6.80E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-IX

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.987
	SRR3591706	second leaf	10.338
	SRR3591707	mature leaf	2.464
	SRR3591708	Shoot apex	11.313
	SRR3591709	Stem	2.817
	SRR3591710	White floral bud	1.153
	SRR3591711	White flower	0.542
	SRR3591712	Green floral bud	4.983
	SRR3591713	Yellow flower	0.078
SRP173429	SRR8316895	Juvenile bud stage	9.995
	SRR8316896	Juvenile bud stage	9.887
	SRR8316897	Juvenile bud stage	3.228
	SRR8316894	Third green stage	3.891
	SRR8316900	Third green stage	7.879
	SRR8316901	Third green stage	5.650
	SRR8316898	Complete white stage	0.580
	SRR8316899	Complete white stage	8.778
	SRR8316903	Complete white stage	1.945
	SRR8316902	Silver flowering stage	0.050
	SRR8316904	Silver flowering stage	0.142
	SRR8316905	Silver flowering stage	0.066
	SRR8316906	Gold flowering stage	0.113
	SRR8316907	Gold flowering stage	0.038
	SRR8316908	Gold flowering stage	0.030
SRP132670	SRR6706286	Control	5.798
	SRR6706287	Light intensity 50%	5.749
	SRR6706288	Light intensity 20%	6.246
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.424
	CNS0095593	Slightly white alabastrum(diploid) 2	3.546
	CNS0095594	Slightly white alabastrum(diploid) 3	4.637
	CNS0095595	Whole white alabastrum(diploid) 2	2.649
	CNS0095596	Whole white alabastrum(diploid) 3	1.250
	CNS0095597	Whole white alabastrum(diploid) 4	2.306
	CNS0095598	Silvery flower (diploied) 1	4.379
	CNS0095599	Silvery flower (diploied) 2	4.629
	CNS0095600	Silvery flower (diploied) 3	2.123
	CNS0095601	Golden flower (diploid) 1	3.378
	CNS0095602	Golden flower (diploid) 2	2.759
	CNS0095603	Golden flower (diploid) 3	2.653
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.367
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.439
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.568
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.478
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.345
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.957
	CNS0095610	Silvery flower (tetraploid) 1	0.547
	CNS0095611	Silvery flower (tetraploid) 2	0.808
	CNS0095612	Silvery flower (tetraploid) 3	0.434
	CNS0095613	Golden flower (tetraploid) 1	0.018
	CNS0095614	Golden flower (tetraploid) 2	0.086
	CNS0095615	Golden flower (tetraploid) 3	0.040
CRA001975	CRR073297	Stem 1	10.834
	CRR073298	Stem 2	9.829
	CRR073299	Stem 3	9.923
	CRR073300	Leaf 1	9.972
	CRR073301	Leaf 2	10.130
	CRR073302	Leaf 3	7.262
	CRR073303	Juvenile bud 1	6.864
	CRR073304	Juvenile bud 2	3.437
	CRR073305	Juvenile bud 3	10.015
	CRR073306	Third green 1	0.133
	CRR073307	Third green 2	0.373
	CRR073308	Third green 3	0.472
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.016
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.335
	CRR073316	Gold flowering 2	0.940
	CRR073317	Gold flowering 3	0.396
	CRR073318	Tawny withering 1	3.768
	CRR073319	Tawny withering 2	1.409
	CRR073320	Tawny withering 3	4.332