Gene detail

Detail information of GWHGAAZE008919

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP33114.1	1.0752E-140	hypothetical protein JCGZ_13561 [Jatropha curcas]
Swissprot	tr\|Q9SJF3\|DCP1_ARATH	1E-99	mRNA-decapping enzyme-like protein
trEMBL	tr\|A0A067KMT7\|A0A067KMT7_JATCU	4E-141	Uncharacterized protein {ECO:0000313\|EMBL:KDP33114.1}
TAIR10	AT1G08370.1	5E-69	decapping 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	96859615	96868187	+
GWHAAZE00000002	mRNA	96859615	96868187	+
GWHAAZE00000002	exon	96859615	96859829	+
GWHAAZE00000002	exon	96859924	96859981	+
GWHAAZE00000002	exon	96860293	96860342	+
GWHAAZE00000002	exon	96860899	96861162	+
GWHAAZE00000002	exon	96864652	96864708	+
GWHAAZE00000002	exon	96866005	96866131	+
GWHAAZE00000002	exon	96867609	96868187	+
GWHAAZE00000002	CDS	96859615	96859829	+
GWHAAZE00000002	CDS	96859924	96859981	+
GWHAAZE00000002	CDS	96860293	96860342	+
GWHAAZE00000002	CDS	96860899	96861162	+
GWHAAZE00000002	CDS	96864652	96864708	+
GWHAAZE00000002	CDS	96866005	96866131	+
GWHAAZE00000002	CDS	96867609	96868187	+

Transcript Sequence
>GWHTAAZE008929 CTACATATACTTACAAACATATATACACAAACAATGTCACAAAATGGTAAATTGATGCCAAATCTGGACCAACAAAGTACAAAGCTCTTGAATTTAACCGTACTTCAGCGTATCGATCCATTCGTTGAAGAAATTCTCATCACTGCTGCTCATGTCACTTTCTACGAATTCAATATCGATCTCAGCCAATGGGTGCGTTATTTTATTTTTCTGTTAGTCGCAAGGATGTGGAAGGATCTCTATTTGTTGTTAAGAGGTAATAATGCCTTTGGGGAATACACAGCCGCGTTTCCAGTTCATTGTAATGAACCGGAGAAATACAGACTCCATCTTACGGTGTATATAAGCATGTTGATGTTAAATGGTAGAAAGGCTTCTATACAACCATGGATGTACATTTTGTTTGTCCTAAGAGGTGCAAATGTGTTGTTGATGCAAACAGATAATTTGGTTGAGAATCTCTTGGGAGATTTTGAGTATGAAGTCCAGGGTCCATATCTATTATATCGAAATGCAACCCAAGAAGTAAATGGTATATGGTTCTATAATGCCCGTGAGTGTGAAGAAGTTGCAAATCTCTTCAGCAGGATCCTTAATGCCTACGCCAAGGTGCCTGCTAAGCCGAAATTGTATTCGACGAAAAGTGAGTTTGAAGAACTCGAAGCAGTTCCAACTATGGCAGTAATAGATGGCCCTTTGGAGCCCTCATCTTCAGCAGCCTCTAGTGTTGCAGATGTTCCTGATGATTCTTCCTTCGTGAACTTCTTCAGTACGGCAATGAATATCAGCAATGCTTCAAACACTGCAAGTTCAGGGCAGTCTTACCAATCATCTACAATGATCCCTCCTCCTCGACAACCCAGTGTTGTTCCTCCCATTATTTCAACCACCCAAAAATCTCCACCACCTCCTCCTCCTCTTTCAGCCTCTACTCCATTAATGCCTCCTCTCGATAATACCATTGAATCCAGCAACAGGGCTGCTAATTTGGTAAAACCGTCTACCTTTTTTGCCCCTGCACCTTCCTCATCTCCATTGACGATGATGCCTGCACCTTCTTCATCTATGCCTAGTGCTCCACCGCTTCATCCTCCTGGGAATCTGCAACGCCCATACGGTGCTCCATTGCTTCAACCATTTCCACCACCTACCCCTCCACCACCGTCTCTTACTCCTTCAAATCCGGCCCCAAACTATGGACCTGTTATTAGCCGGGACCAAGTCCGTGATGCTCTGCTCTTGCTTGTTCAGGTACATACTTCTCTATTGCTTGTTGGGATTTTAGCCTCCAATACTAGCATAATCATATTATCACAAAAGGAGTTGGATATTCAACATCAACACAAATAG

Network for GWHGAAZE008919

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06058.14	DCP1	28	66	1.30E-07
PF06058.14	DCP1	146	195	2.50E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12611	DCP1B	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0043085	biological_process	positive regulation of catalytic activity
GO:0008047	molecular_function	enzyme activator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.546
	SRR3591706	second leaf	8.355
	SRR3591707	mature leaf	7.735
	SRR3591708	Shoot apex	13.220
	SRR3591709	Stem	25.578
	SRR3591710	White floral bud	12.379
	SRR3591711	White flower	14.597
	SRR3591712	Green floral bud	22.173
	SRR3591713	Yellow flower	12.383
SRP173429	SRR8316895	Juvenile bud stage	14.442
	SRR8316896	Juvenile bud stage	22.758
	SRR8316897	Juvenile bud stage	9.684
	SRR8316894	Third green stage	8.049
	SRR8316900	Third green stage	16.463
	SRR8316901	Third green stage	18.608
	SRR8316898	Complete white stage	4.105
	SRR8316899	Complete white stage	14.828
	SRR8316903	Complete white stage	9.687
	SRR8316902	Silver flowering stage	6.254
	SRR8316904	Silver flowering stage	8.163
	SRR8316905	Silver flowering stage	4.260
	SRR8316906	Gold flowering stage	12.318
	SRR8316907	Gold flowering stage	12.151
	SRR8316908	Gold flowering stage	13.284
SRP132670	SRR6706286	Control	17.612
	SRR6706287	Light intensity 50%	16.388
	SRR6706288	Light intensity 20%	14.568
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.917
	CNS0095593	Slightly white alabastrum(diploid) 2	13.842
	CNS0095594	Slightly white alabastrum(diploid) 3	12.030
	CNS0095595	Whole white alabastrum(diploid) 2	11.244
	CNS0095596	Whole white alabastrum(diploid) 3	10.590
	CNS0095597	Whole white alabastrum(diploid) 4	8.133
	CNS0095598	Silvery flower (diploied) 1	9.332
	CNS0095599	Silvery flower (diploied) 2	6.912
	CNS0095600	Silvery flower (diploied) 3	12.674
	CNS0095601	Golden flower (diploid) 1	6.294
	CNS0095602	Golden flower (diploid) 2	13.321
	CNS0095603	Golden flower (diploid) 3	13.193
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.463
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.179
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.420
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.082
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.392
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.192
	CNS0095610	Silvery flower (tetraploid) 1	12.453
	CNS0095611	Silvery flower (tetraploid) 2	14.112
	CNS0095612	Silvery flower (tetraploid) 3	12.431
	CNS0095613	Golden flower (tetraploid) 1	6.268
	CNS0095614	Golden flower (tetraploid) 2	10.110
	CNS0095615	Golden flower (tetraploid) 3	8.953
CRA001975	CRR073297	Stem 1	27.848
	CRR073298	Stem 2	25.508
	CRR073299	Stem 3	21.976
	CRR073300	Leaf 1	19.669
	CRR073301	Leaf 2	22.678
	CRR073302	Leaf 3	16.712
	CRR073303	Juvenile bud 1	13.830
	CRR073304	Juvenile bud 2	15.687
	CRR073305	Juvenile bud 3	17.208
	CRR073306	Third green 1	6.130
	CRR073307	Third green 2	6.194
	CRR073308	Third green 3	6.102
	CRR073309	Second white 1	9.993
	CRR073310	Second white 2	9.582
	CRR073311	Second white 3	9.465
	CRR073312	Silver flowering 1	10.873
	CRR073313	Silver flowering 2	12.346
	CRR073314	Silver flowering 3	10.211
	CRR073315	Gold flowering 1	11.124
	CRR073316	Gold flowering 2	12.708
	CRR073317	Gold flowering 3	11.305
	CRR073318	Tawny withering 1	22.333
	CRR073319	Tawny withering 2	17.794
	CRR073320	Tawny withering 3	29.842