Detail information of GWHGAAZE008899


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007015806.12.26641E-94Calcium-binding EF-hand family protein [Theobroma cacao]
Swissprottr|Q9ZQH1|CML48_ARATH4E-63Probable calcium-binding protein CML48
trEMBLtr|A0A061GU85|A0A061GU85_THECC8E-95Calcium-binding EF-hand family protein {ECO:0000313|EMBL:EOY33425.1}
TAIR10AT2G27480.12E-48Calcium-binding EF-hand family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9637710096380745-
GWHAAZE00000002mRNA9637710096380745-
GWHAAZE00000002exon9637710096377145-
GWHAAZE00000002exon9637726196377436-
GWHAAZE00000002exon9637821896378264-
GWHAAZE00000002exon9638041296380745-
GWHAAZE00000002CDS9638041296380745-
GWHAAZE00000002CDS9637821896378264-
GWHAAZE00000002CDS9637726196377436-
GWHAAZE00000002CDS9637710096377145-
Transcript Sequence

Network for GWHGAAZE008899

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13202.7EF-hand_561814.30E-05
PF00036.33EF-hand_11261521.30E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13448CML Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0005509molecular_functioncalcium ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.010
SRR3591706second leaf7.055
SRR3591707mature leaf4.271
SRR3591708Shoot apex14.986
SRR3591709Stem11.999
SRR3591710White floral bud17.713
SRR3591711White flower11.501
SRR3591712Green floral bud7.149
SRR3591713Yellow flower14.547
SRP173429 SRR8316895Juvenile bud stage 5.668
SRR8316896Juvenile bud stage 4.814
SRR8316897Juvenile bud stage 6.932
SRR8316894Third green stage 1.476
SRR8316900Third green stage 3.084
SRR8316901Third green stage 4.372
SRR8316898Complete white stage 2.883
SRR8316899Complete white stage 10.540
SRR8316903Complete white stage 6.461
SRR8316902Silver flowering stage5.818
SRR8316904Silver flowering stage4.268
SRR8316905Silver flowering stage2.662
SRR8316906Gold flowering stage 8.981
SRR8316907Gold flowering stage 10.725
SRR8316908Gold flowering stage 7.260
SRP132670SRR6706286Control3.932
SRR6706287Light intensity 50%4.009
SRR6706288Light intensity 20%3.353
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.643
CNS0095593Slightly white alabastrum(diploid) 25.019
CNS0095594Slightly white alabastrum(diploid) 38.911
CNS0095595Whole white alabastrum(diploid) 27.300
CNS0095596Whole white alabastrum(diploid) 33.784
CNS0095597Whole white alabastrum(diploid) 45.064
CNS0095598Silvery flower (diploied) 111.386
CNS0095599Silvery flower (diploied) 29.003
CNS0095600Silvery flower (diploied) 34.839
CNS0095601Golden flower (diploid) 19.663
CNS0095602Golden flower (diploid) 29.533
CNS0095603Golden flower (diploid) 37.774
CNS0095604Slightly white alabastrum(tetraploid) 10.601
CNS0095605Slightly white alabastrum(tetraploid) 20.868
CNS0095606Slightly white alabastrum(tetraploid) 32.146
CNS0095607Whole white alabastrum(tetraploid) 10.527
CNS0095608Whole white alabastrum(tetraploid) 20.319
CNS0095609Whole white alabastrum(tetraploid) 31.324
CNS0095610Silvery flower (tetraploid) 11.615
CNS0095611Silvery flower (tetraploid) 23.011
CNS0095612Silvery flower (tetraploid) 35.565
CNS0095613Golden flower (tetraploid) 12.354
CNS0095614Golden flower (tetraploid) 21.672
CNS0095615Golden flower (tetraploid) 32.721
CRA001975CRR073297Stem 19.261
CRR073298Stem 26.961
CRR073299Stem 39.045
CRR073300Leaf 110.570
CRR073301Leaf 26.708
CRR073302Leaf 35.933
CRR073303Juvenile bud 110.897
CRR073304Juvenile bud 211.143
CRR073305Juvenile bud 37.325
CRR073306Third green 16.956
CRR073307Third green 28.859
CRR073308Third green 37.706
CRR073309Second white 119.437
CRR073310Second white 215.932
CRR073311Second white 314.322
CRR073312Silver flowering 137.435
CRR073313Silver flowering 240.765
CRR073314Silver flowering 327.972
CRR073315Gold flowering 121.175
CRR073316Gold flowering 218.548
CRR073317Gold flowering 326.376
CRR073318Tawny withering 114.907
CRR073319Tawny withering 292.945
CRR073320Tawny withering 317.760