Gene detail

Detail information of GWHGAAZE008896

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008806967.1	5.0141E-123	PREDICTED: 60S ribosomal protein L10a-2 [Phoenix dactylifera]
Swissprot	tr\|Q8VZB9\|R10A1_ARATH	5E-115	60S ribosomal protein L10a-1
trEMBL	tr\|A0A059ABT7\|A0A059ABT7_EUCGR	3E-123	Ribosomal protein {ECO:0000256\|RuleBase:RU000659}
TAIR10	AT1G08360.1	7E-91	Ribosomal protein L1p/L10e family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	96330239	96332753	+
GWHAAZE00000002	mRNA	96330239	96332753	+
GWHAAZE00000002	exon	96330239	96330490	+
GWHAAZE00000002	exon	96330976	96331141	+
GWHAAZE00000002	exon	96331343	96331582	+
GWHAAZE00000002	exon	96332370	96332753	+
GWHAAZE00000002	CDS	96330239	96330490	+
GWHAAZE00000002	CDS	96330976	96331141	+
GWHAAZE00000002	CDS	96331343	96331582	+
GWHAAZE00000002	CDS	96332370	96332485	+
GWHAAZE00000002	three_prime_UTR	96332486	96332753	+

Transcript Sequence
>GWHTAAZE008906 ATGACTTTGTTGCATACTATTTCACGCAGTAAGCTTCAGAGTGATGCCCTGAGAGAGGCCATAACTCAGATTTCTAATGATGCAAAGGGTGAAAAGAAGCGTAATTTCACCGAAACTATTGAGCTCCAGATTGGGCTTAAGAACTATGATCCCCAAAAGGATAAGCGTTTCAGTGGGTCTGTGAAGTTGCCCCATATTCCTCGTCCTAAGATGAAGGTTTGCATGCTTGGTGATGCTCAGCATGTGGAAGAGGCAGAAAAGATAGGTTTAGAATACATGGACGTTGAGGGGCTGAAGAAACTCAACAAGAACAAGAAATTGGTGAAGAAGCTTGCTAAGAAATACCATGCTTTCTTAGCTTCTGAAGCCGTCATCAAACAGATTCCCAGACTTTTAGGCCCTGGCCTAAACAAGGCAGGGAAGTTCCCTACACTTGTTACACACCAGGAATCTTTGGAGTCTAAAGTTAATGAAATAAAGGCGACAGTCAAGTTCCAGTTGAAGAAGGTACTGTGCATGGGAGTTGCTGTGGGTAACTGCAGTATGGAGGAGAAGCAGATCTTTCAGAACGTTCAGATGAGCGTCAATTTTCTTGTCTCTTTATTGAAGAAGAACTGGCAAAACGTGAGTCTTTCATTCTTGTCTCTATTTAGTTTGCGTGAGGTGCTTGTACCTCAAGAGTACAATGGGGAAGCCGGTCCGCATCTTTTAAGGTATGCTTTGCTCTTTTATTGGAGCAGTATAAGGAGTAAGTTGTATGAGCAATTACTTTAAAATGTTTCCGTTAATAGACAACAGTTTTTGTGTTTAAATCTCCCAATTTTCCTTATCATTTGATAATATGTTGAATGTGGCAAACTATGATATGTTTCGTTTCTTGTACTCAATGGTACTGATAGTAATGCATGTCGAGATATTTTTAGTGTTAGTGCTCTTAAATTTATATTGAACCATTTTTAGGTGCTCTCAAATTATTTGTATGTGATTTTAAGGGTTACAATTTTTAGACATTTTTTATATTAAATAACATTTCTCTTAAATA

Network for GWHGAAZE008896

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00687.22	Ribosomal_L1	32	214	2.70E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02865	RP-L10Ae, RPL10A	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0015934	cellular_component	large ribosomal subunit
GO:0003723	molecular_function	RNA binding
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	72.793
	SRR3591706	second leaf	33.098
	SRR3591707	mature leaf	25.904
	SRR3591708	Shoot apex	83.256
	SRR3591709	Stem	43.413
	SRR3591710	White floral bud	37.304
	SRR3591711	White flower	49.081
	SRR3591712	Green floral bud	72.284
	SRR3591713	Yellow flower	34.050
SRP173429	SRR8316895	Juvenile bud stage	54.980
	SRR8316896	Juvenile bud stage	73.609
	SRR8316897	Juvenile bud stage	33.679
	SRR8316894	Third green stage	28.573
	SRR8316900	Third green stage	109.411
	SRR8316901	Third green stage	99.487
	SRR8316898	Complete white stage	22.258
	SRR8316899	Complete white stage	95.991
	SRR8316903	Complete white stage	35.255
	SRR8316902	Silver flowering stage	19.607
	SRR8316904	Silver flowering stage	23.173
	SRR8316905	Silver flowering stage	10.170
	SRR8316906	Gold flowering stage	40.093
	SRR8316907	Gold flowering stage	36.852
	SRR8316908	Gold flowering stage	42.484
SRP132670	SRR6706286	Control	93.271
	SRR6706287	Light intensity 50%	102.426
	SRR6706288	Light intensity 20%	102.105
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	134.835
	CNS0095593	Slightly white alabastrum(diploid) 2	149.659
	CNS0095594	Slightly white alabastrum(diploid) 3	122.634
	CNS0095595	Whole white alabastrum(diploid) 2	122.104
	CNS0095596	Whole white alabastrum(diploid) 3	126.960
	CNS0095597	Whole white alabastrum(diploid) 4	99.315
	CNS0095598	Silvery flower (diploied) 1	101.869
	CNS0095599	Silvery flower (diploied) 2	72.512
	CNS0095600	Silvery flower (diploied) 3	60.834
	CNS0095601	Golden flower (diploid) 1	96.151
	CNS0095602	Golden flower (diploid) 2	60.646
	CNS0095603	Golden flower (diploid) 3	67.495
	CNS0095604	Slightly white alabastrum(tetraploid) 1	92.470
	CNS0095605	Slightly white alabastrum(tetraploid) 2	88.919
	CNS0095606	Slightly white alabastrum(tetraploid) 3	97.782
	CNS0095607	Whole white alabastrum(tetraploid) 1	52.521
	CNS0095608	Whole white alabastrum(tetraploid) 2	63.951
	CNS0095609	Whole white alabastrum(tetraploid) 3	82.774
	CNS0095610	Silvery flower (tetraploid) 1	46.319
	CNS0095611	Silvery flower (tetraploid) 2	59.227
	CNS0095612	Silvery flower (tetraploid) 3	40.539
	CNS0095613	Golden flower (tetraploid) 1	32.561
	CNS0095614	Golden flower (tetraploid) 2	40.297
	CNS0095615	Golden flower (tetraploid) 3	24.397
CRA001975	CRR073297	Stem 1	88.576
	CRR073298	Stem 2	75.530
	CRR073299	Stem 3	58.768
	CRR073300	Leaf 1	79.493
	CRR073301	Leaf 2	73.168
	CRR073302	Leaf 3	87.044
	CRR073303	Juvenile bud 1	82.353
	CRR073304	Juvenile bud 2	64.404
	CRR073305	Juvenile bud 3	56.990
	CRR073306	Third green 1	13.307
	CRR073307	Third green 2	20.216
	CRR073308	Third green 3	14.862
	CRR073309	Second white 1	19.370
	CRR073310	Second white 2	19.716
	CRR073311	Second white 3	13.695
	CRR073312	Silver flowering 1	16.097
	CRR073313	Silver flowering 2	20.164
	CRR073314	Silver flowering 3	16.147
	CRR073315	Gold flowering 1	61.506
	CRR073316	Gold flowering 2	50.260
	CRR073317	Gold flowering 3	46.141
	CRR073318	Tawny withering 1	85.144
	CRR073319	Tawny withering 2	77.897
	CRR073320	Tawny withering 3	80.255