Gene detail

Detail information of GWHGAAZE008875

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006365672.1	0	PREDICTED: dnaJ protein homolog isoform X1 [Solanum tuberosum]
Swissprot	tr\|Q04960\|DNJH_CUCSA	0	DnaJ protein homolog (Precursor)
trEMBL	tr\|M0ZPC7\|M0ZPC7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400005019}
TAIR10	AT3G44110.1	4E-150	DNAJ homologue 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	95253394	95257470	-
GWHAAZE00000002	mRNA	95253394	95257470	-
GWHAAZE00000002	exon	95253394	95253719	-
GWHAAZE00000002	exon	95254078	95254351	-
GWHAAZE00000002	exon	95254458	95254734	-
GWHAAZE00000002	exon	95255050	95255197	-
GWHAAZE00000002	exon	95256408	95256576	-
GWHAAZE00000002	exon	95257321	95257470	-
GWHAAZE00000002	CDS	95257321	95257470	-
GWHAAZE00000002	CDS	95256408	95256576	-
GWHAAZE00000002	CDS	95255050	95255197	-
GWHAAZE00000002	CDS	95254458	95254734	-
GWHAAZE00000002	CDS	95254078	95254351	-
GWHAAZE00000002	CDS	95253394	95253719	-

Transcript Sequence
>GWHTAAZE008885 ATGTTTGGGAGGGGGCCGAAGAAGAGTGATAATTCCAAGTACTATGATATATTGGGGGTTTCGAAGAATGCGAGCCAGGATGATTTGAAGAAGGCGTATCGTAAGGCTGCGATTAAGAATCATCCGGACAAGGGTGGTGATCCCGAGAAGTTTAAGGAACTTGCTCAGGCTTATGAGGTTTTGAGTGACCCTGAAAAGCGTGAGATATACGATCAGTACGGTGAGGATGCATTGAAGGAAGGAATGGGAGGAGGTGGTGGTGGTATGCATGACCCATTTGACATCTTCCAATCCTTCTTTGGTGGAAGCCCATTTGGAGGTGGTGGTGGTGGTAGCAGTAGGGGACGAAGGCAGAGGAGGGGAGAGGATGTAGTGCATCCCTTGAAGGTCTCACTGGAGGACTTGTACAATGGGACATCTAAGAAGCTCTCTCTCTCCCGCAACGTCATCTGCTCACGCTGCAGTGGTAAGGGATCTAAATCTGGAGCTTCAATGAAGTGTTCTGGTTGTCAAGGAAGTGGAATGAAGGTCTCCATTAGACAGCTTGGCCCTTCCATGATCCAGCAAATGCAGCACCCGTGTAACGAATGCAAGGGAACTGGAGAGTCCATTAGTGATAAGGATCGTTGCCCTCAGTGCAAAGGTGAAAAAGTTGTCCAAGAAAAGAAGGTGCTTGAAGTCCATGTGGAAAAGGGTATGCAGAATGGACAGAAGATTACGTTCCCCGGGGAGGCTGATGAAGCTCCTGATACTGTTACAGGGGATATAGTCTTTGTTCTCCAGCAGAAGGAACATCCTAGGTTTAAAAGAAAGGGAGAAGACCTTTTTGTGGAGCACACTTTGGCTCTCACAGAGGCCTTGTGTGGCTTCCGGTTTATTTTGACTCACTTGGATGGTAGGCAGCTCCTTGTTAAATCAAACCCGGGGGAGGTTATCAAGCCTGGTGAGTTAGCTCTTCAAAATTTTCTTGGTGGTTACCTTGTTTCAGTCGTTTGTGTTTCGGAGTGTGTGTATAATGATCAATTCAAGGGGATAAACGATGAGGGTATGCCGATGTACCAAAGGCCTTTCATGAAGGGGAAGCTATACATTCACTTCACGGTTGAATTCCCAGACTCGTTGAGTCCGGACCAGGTCAAGGCCTTGGAGGCTGTGCTGCCACCTAAGCCATCGATGCAGATGACAGAGATGGAGCTGGATGAGTGTGAAGAGACCACTCTGCATGATGTCAACATAGAAGAAGAAATGAGGAGGAAGGCTCATGCACAGGCTCAGGAGGCTTATGATGAGGACGATGACATGCATGGTGGTGGAGCCCAGAGAGTGCAATGTGCCCAGCAGTGA

Network for GWHGAAZE008875

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00226.32	DnaJ	13	71	3.40E-23
PF01556.19	DnaJ_C	125	371	3.80E-37
PF00684.20	DnaJ_CXXCXGXG	151	217	4.40E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09503	DNAJA2	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0009408	biological_process	response to heat
GO:0031072	molecular_function	heat shock protein binding
GO:0051082	molecular_function	unfolded protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	242.847
	SRR3591706	second leaf	95.399
	SRR3591707	mature leaf	193.106
	SRR3591708	Shoot apex	143.985
	SRR3591709	Stem	344.979
	SRR3591710	White floral bud	150.838
	SRR3591711	White flower	224.785
	SRR3591712	Green floral bud	155.427
	SRR3591713	Yellow flower	207.229
SRP173429	SRR8316895	Juvenile bud stage	192.649
	SRR8316896	Juvenile bud stage	344.249
	SRR8316897	Juvenile bud stage	149.841
	SRR8316894	Third green stage	73.034
	SRR8316900	Third green stage	227.995
	SRR8316901	Third green stage	255.401
	SRR8316898	Complete white stage	104.110
	SRR8316899	Complete white stage	311.027
	SRR8316903	Complete white stage	163.372
	SRR8316902	Silver flowering stage	190.096
	SRR8316904	Silver flowering stage	190.077
	SRR8316905	Silver flowering stage	129.035
	SRR8316906	Gold flowering stage	467.241
	SRR8316907	Gold flowering stage	504.692
	SRR8316908	Gold flowering stage	420.120
SRP132670	SRR6706286	Control	197.831
	SRR6706287	Light intensity 50%	197.173
	SRR6706288	Light intensity 20%	195.664
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	138.977
	CNS0095593	Slightly white alabastrum(diploid) 2	159.110
	CNS0095594	Slightly white alabastrum(diploid) 3	140.415
	CNS0095595	Whole white alabastrum(diploid) 2	126.283
	CNS0095596	Whole white alabastrum(diploid) 3	101.745
	CNS0095597	Whole white alabastrum(diploid) 4	101.461
	CNS0095598	Silvery flower (diploied) 1	128.920
	CNS0095599	Silvery flower (diploied) 2	365.557
	CNS0095600	Silvery flower (diploied) 3	311.521
	CNS0095601	Golden flower (diploid) 1	527.655
	CNS0095602	Golden flower (diploid) 2	326.212
	CNS0095603	Golden flower (diploid) 3	327.298
	CNS0095604	Slightly white alabastrum(tetraploid) 1	166.198
	CNS0095605	Slightly white alabastrum(tetraploid) 2	143.198
	CNS0095606	Slightly white alabastrum(tetraploid) 3	287.158
	CNS0095607	Whole white alabastrum(tetraploid) 1	126.010
	CNS0095608	Whole white alabastrum(tetraploid) 2	101.646
	CNS0095609	Whole white alabastrum(tetraploid) 3	196.414
	CNS0095610	Silvery flower (tetraploid) 1	252.950
	CNS0095611	Silvery flower (tetraploid) 2	268.823
	CNS0095612	Silvery flower (tetraploid) 3	244.383
	CNS0095613	Golden flower (tetraploid) 1	262.529
	CNS0095614	Golden flower (tetraploid) 2	272.553
	CNS0095615	Golden flower (tetraploid) 3	165.723
CRA001975	CRR073297	Stem 1	106.994
	CRR073298	Stem 2	105.616
	CRR073299	Stem 3	122.412
	CRR073300	Leaf 1	123.317
	CRR073301	Leaf 2	129.421
	CRR073302	Leaf 3	130.684
	CRR073303	Juvenile bud 1	141.765
	CRR073304	Juvenile bud 2	151.639
	CRR073305	Juvenile bud 3	189.170
	CRR073306	Third green 1	327.172
	CRR073307	Third green 2	223.493
	CRR073308	Third green 3	235.542
	CRR073309	Second white 1	349.477
	CRR073310	Second white 2	290.140
	CRR073311	Second white 3	285.051
	CRR073312	Silver flowering 1	246.225
	CRR073313	Silver flowering 2	217.712
	CRR073314	Silver flowering 3	218.534
	CRR073315	Gold flowering 1	96.290
	CRR073316	Gold flowering 2	110.429
	CRR073317	Gold flowering 3	96.945
	CRR073318	Tawny withering 1	262.071
	CRR073319	Tawny withering 2	278.149
	CRR073320	Tawny withering 3	256.132