Detail information of GWHGAAZE008856


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010243830.10PREDICTED: cyclin-dependent kinase C-2-like [Nelumbo nucifera]
Swissprottr|Q9LFT8|CDKC1_ARATH0Cyclin-dependent kinase C-1
trEMBLtr|F6H9Y5|F6H9Y5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB49135.1}
TAIR10AT5G10270.17E-173cyclin-dependent kinase C;1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9477055494775616-
GWHAAZE00000002mRNA9477055494775616-
GWHAAZE00000002exon9477055494771112-
GWHAAZE00000002exon9477232994772597-
GWHAAZE00000002exon9477278894772905-
GWHAAZE00000002exon9477308094773200-
GWHAAZE00000002exon9477350894773580-
GWHAAZE00000002exon9477367594773784-
GWHAAZE00000002exon9477476594774798-
GWHAAZE00000002exon9477495194775007-
GWHAAZE00000002exon9477517994775260-
GWHAAZE00000002exon9477557994775616-
GWHAAZE00000002CDS9477557994775616-
GWHAAZE00000002CDS9477517994775260-
GWHAAZE00000002CDS9477495194775007-
GWHAAZE00000002CDS9477476594774798-
GWHAAZE00000002CDS9477367594773784-
GWHAAZE00000002CDS9477350894773580-
GWHAAZE00000002CDS9477308094773200-
GWHAAZE00000002CDS9477278894772905-
GWHAAZE00000002CDS9477232994772597-
GWHAAZE00000002CDS9477055494771112-
Transcript Sequence

Network for GWHGAAZE008856

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase142901.30E-63
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyCMGC_CDK-CRK7-CDK9

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf36.741
SRR3591706second leaf26.280
SRR3591707mature leaf21.324
SRR3591708Shoot apex39.125
SRR3591709Stem44.706
SRR3591710White floral bud41.369
SRR3591711White flower43.427
SRR3591712Green floral bud37.371
SRR3591713Yellow flower40.778
SRP173429 SRR8316895Juvenile bud stage 24.863
SRR8316896Juvenile bud stage 36.750
SRR8316897Juvenile bud stage 20.987
SRR8316894Third green stage 14.293
SRR8316900Third green stage 41.766
SRR8316901Third green stage 41.155
SRR8316898Complete white stage 20.731
SRR8316899Complete white stage 56.941
SRR8316903Complete white stage 29.432
SRR8316902Silver flowering stage20.736
SRR8316904Silver flowering stage22.421
SRR8316905Silver flowering stage13.910
SRR8316906Gold flowering stage 41.866
SRR8316907Gold flowering stage 43.240
SRR8316908Gold flowering stage 45.251
SRP132670SRR6706286Control47.928
SRR6706287Light intensity 50%48.181
SRR6706288Light intensity 20%51.600
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.639
CNS0095593Slightly white alabastrum(diploid) 230.564
CNS0095594Slightly white alabastrum(diploid) 321.222
CNS0095595Whole white alabastrum(diploid) 223.284
CNS0095596Whole white alabastrum(diploid) 323.759
CNS0095597Whole white alabastrum(diploid) 421.236
CNS0095598Silvery flower (diploied) 127.460
CNS0095599Silvery flower (diploied) 229.628
CNS0095600Silvery flower (diploied) 339.512
CNS0095601Golden flower (diploid) 122.693
CNS0095602Golden flower (diploid) 233.995
CNS0095603Golden flower (diploid) 330.129
CNS0095604Slightly white alabastrum(tetraploid) 133.072
CNS0095605Slightly white alabastrum(tetraploid) 228.811
CNS0095606Slightly white alabastrum(tetraploid) 356.312
CNS0095607Whole white alabastrum(tetraploid) 118.728
CNS0095608Whole white alabastrum(tetraploid) 216.253
CNS0095609Whole white alabastrum(tetraploid) 342.003
CNS0095610Silvery flower (tetraploid) 156.657
CNS0095611Silvery flower (tetraploid) 244.839
CNS0095612Silvery flower (tetraploid) 360.057
CNS0095613Golden flower (tetraploid) 133.090
CNS0095614Golden flower (tetraploid) 248.928
CNS0095615Golden flower (tetraploid) 333.314
CRA001975CRR073297Stem 140.761
CRR073298Stem 237.495
CRR073299Stem 342.455
CRR073300Leaf 146.769
CRR073301Leaf 242.168
CRR073302Leaf 345.864
CRR073303Juvenile bud 144.110
CRR073304Juvenile bud 242.543
CRR073305Juvenile bud 351.735
CRR073306Third green 130.161
CRR073307Third green 225.480
CRR073308Third green 325.734
CRR073309Second white 141.690
CRR073310Second white 240.498
CRR073311Second white 333.330
CRR073312Silver flowering 129.165
CRR073313Silver flowering 231.289
CRR073314Silver flowering 329.950
CRR073315Gold flowering 120.063
CRR073316Gold flowering 222.764
CRR073317Gold flowering 320.254
CRR073318Tawny withering 122.491
CRR073319Tawny withering 222.693
CRR073320Tawny withering 325.415